BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0060.1
(762 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 707 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 659 0.0
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 607 0.0
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/604 (57%), Positives = 438/604 (72%), Gaps = 38/604 (6%)
Query: 141 KKEGTHDSDQGIYVIEVNLANTFDSQSWVFDTGCGAHIIYDVQGLKGIKYLSGRELVLRV 200
KK+ + S GI VI++NLA T + SWVFDTG AH +QG++ + L E+ LRV
Sbjct: 276 KKKQSTTSASGINVIDINLA-TSPTDSWVFDTGSVAHSCKSLQGMRRSRGLRRGEVNLRV 334
Query: 201 ANRATVAAKAVGTFSLPLETGLFLELHNCYYVPSISRNIISVSELDKEGYHLLIKNHRCS 260
N A+VA AVGT L L +GL LEL+NCY VP++ +N+IS S L EGY N+ CS
Sbjct: 335 GNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISASCLQAEGYDFRSMNNGCS 394
Query: 261 LYKGEMFYTSAKLYNGLYITNIK-NEVFNIETNRLRSDDSNPSYLWHCRLGHINMTRMKK 319
+Y +MFY A L NGLY+ N++ + ++NI T R S+D NP+++WHCRLGHIN RM+K
Sbjct: 395 IYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINPTFIWHCRLGHINKKRMEK 454
Query: 320 LHEHGLLGSYNLESYDTCESCLMGKMTRSSFKGKGDRAKEPLELIHTDVCGPMSTPARGN 379
LH+ GLL S++ ES++TCESCL+GKMT++ F G +RA + L L+HTDVCGPMS+ ARG
Sbjct: 455 LHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGG 514
Query: 380 YGYFITFTDDFTRYGYIYLMRHMSESFDMFKQFQNEVENQLGKKIKVIRSDRGGEYLSQE 439
Y YFITFTDDF+RYGYIYLMRH SESF+ FK+FQNEV+N LGK IK +RSDRGGEY+SQE
Sbjct: 515 YQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQE 574
Query: 440 FDDHLRSCGIISQLTPPGTPQMNGVSERRNRTLLDMVRSMMSLANLPNTFWGYALETAAF 499
F +HL+ CGI+ QLTPPGTPQ NGVSERRNRTLLDMVRSMMS ++LP +FWGYALETAA
Sbjct: 575 FGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAL 634
Query: 500 TLNRAPSKAVEKTPYELWFGKIPKLSFLKVWGCEVYVKRLQGDKLAPKSDKCLFVGYPKE 559
TLNR PSK+VEKTPYE+W G+ P LSFLK+WGCE YVKRLQ DKL PKSDKC VGYPKE
Sbjct: 635 TLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSDKLTPKSDKCFVVGYPKE 694
Query: 560 TRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQINTDIEISRGLAA 619
T+GYYFY+ + KVFVAR GVFLEKEFLS++ SG V ++E++ E ++A
Sbjct: 695 TKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQ---------ETPETVSA 745
Query: 620 PIYTQSMEEENEVERVPPAQVESNSQETSQLVENTPKVAQAPRRSQRLQEL------SQK 673
T+ +E+ V PP V +TP APRRS+R + +++
Sbjct: 746 T--TEPQQEDQSV--APP-------------VVDTP----APRRSERSRRAPDRYTGAEQ 784
Query: 674 TDILLLEDNEPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDGAKPIGCKWV 733
DILLL+++EP TY +AM DS KWL AM+SE++SM +NQVWNL+D PDG K I CKW+
Sbjct: 785 RDILLLDNDEPKTYEEAMVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWL 844
Query: 734 FKVK 737
FK K
Sbjct: 845 FKKK 848
Score = 96.3 bits (238), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 7 FNLCSILDEDKLNMDNFLDWEKRLRSVLKSTNKESVLDTPIPK-ITANSKIEEQKQAKSI 65
FNL SIL+++KLN NF+DW + LR VLK KE VL+ P P+ + N+ ++ +
Sbjct: 10 FNLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFEKH 69
Query: 66 RMKSISVTCLMLATMEPNLQKRFRKMDAHTIIRRLRDMSRNKSRLRKYGTSKAI 119
++ ++CLMLATM P LQK++ DAHT I+ LR M N++R ++ TSK++
Sbjct: 70 TNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSL 123
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/517 (59%), Positives = 384/517 (74%), Gaps = 23/517 (4%)
Query: 222 LFLELHNCYYVPSISRNIISVSELDKEGYHLLIKNHRCSLYKGEMFYTSAKLYNGLYITN 281
+ LEL NCYYVP+I++NIISVS LD EG+H IKN CS + +MFY SA L NGL++ N
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 282 IKNEVFNIETNRLRSDDSNPSYLWHCRLGHINMTRMKKLHEHGLLGSYNLESYDTCESCL 341
++NI T + +S+D NP++LWHCRLGHIN ++KLH GLL S++ ESY+TCESCL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 342 MGKMTRSSFKGKGDRAKEPLELIHTDVCGPMSTPARGNYGYFITFTDDFTRYGYIYLMRH 401
+GKMT++ F G +RA + L LIHTDVCGPMST ARGNY YFITFTDDF+RYGY+YLM+H
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKH 180
Query: 402 MSESFDMFKQFQNEVENQLGKKIKVIRSDRGGEYLSQEFDDHLRSCGIISQLTPPGTPQM 461
S+SF+ FK+FQNEV+NQ GK IK +RSDRGGEYLSQ F DHLR CGI+SQLTPPGTPQ
Sbjct: 181 KSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQW 240
Query: 462 NGVSERRNRTLLDMVRSMMSLANLPNTFWGYALETAAFTLNRAPSKAVEKTPYELWFGKI 521
NGVSERRNRTLLDMVRSMMS +LP+ FWGYALET+AF LNR PSK+VEKTPYE+W GK+
Sbjct: 241 NGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKV 300
Query: 522 PKLSFLKVWGCEVYVKRLQGDKLAPKSDKCLFVGYPKETRGYYFYHESENKVFVARDGVF 581
P LSFLK+WGCE Y KRL DKL PKSDKC FVGYPKET+GYYFYH ++NKVFV R+G F
Sbjct: 301 PNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAF 360
Query: 582 LEKEFLSKQTSGRNVDIDEIRYEQQINTDIEISRGLAAPIYTQSMEEENEVER-VPPAQV 640
LE+EFLSK TSG V ++E+R Q + T E + ++ R V P V
Sbjct: 361 LEREFLSKGTSGSKVLLEEVREPQ-------------GDVPTSQEEHQLDLRRVVEPILV 407
Query: 641 ESNSQETSQLVENTPKVAQAPRRSQRLQELSQKTDILLLEDNEPSTYNQAMTSPDSEKWL 700
E V + + P R + + + ++E +EP++Y +A+ PDS+KWL
Sbjct: 408 EPE-------VRRSERSRHEPDRFRDW--VMDDHALFMIESDEPTSYEEALMGPDSDKWL 458
Query: 701 KAMRSEMDSMSENQVWNLIDLPDGAKPIGCKWVFKVK 737
+A +SEM+SMS+N+VW L+DLPDG KPI CKW+FK K
Sbjct: 459 EAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKK 495
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 607 bits (1565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 288/479 (60%), Positives = 360/479 (75%), Gaps = 2/479 (0%)
Query: 135 IQKNKRKKEGTHDSDQGIYVIEVNLANTFDSQSWVFDTGCGAHIIYDVQGLKGIKYLSGR 194
+++ K+K++ S GI VIE+NLA T + SWVFDTG AHI +QGLK + L+
Sbjct: 246 LEQLKQKQQDGKSSTSGINVIEINLA-TSSTDSWVFDTGSVAHICKSLQGLKRSRSLARG 304
Query: 195 ELVLRVANRATVAAKAVGTFSLPLETGLFLELHNCYYVPSISRNIISVSELDKEGYHLLI 254
E+ +RV N A VAA AVGT L L + L LEL+N Y +P++ +N+IS S L EGY
Sbjct: 305 EVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRS 364
Query: 255 KNHRCSLYKGEMFYTSAKLYNGLYITNIKN-EVFNIETNRLRSDDSNPSYLWHCRLGHIN 313
++ CS+Y ++FY A + +GLYI N+ V+NI R R +D NP+++WHCRLGHIN
Sbjct: 365 VDNDCSVYYNDIFYFHAPMMSGLYIVNLNGYSVYNINAKRQRPNDLNPTFIWHCRLGHIN 424
Query: 314 MTRMKKLHEHGLLGSYNLESYDTCESCLMGKMTRSSFKGKGDRAKEPLELIHTDVCGPMS 373
RM+K+H GLL S++ ES++TCESCL+GKMT++ F G+ +RA E L L+HTDVCGPMS
Sbjct: 425 EKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMS 484
Query: 374 TPARGNYGYFITFTDDFTRYGYIYLMRHMSESFDMFKQFQNEVENQLGKKIKVIRSDRGG 433
+ ARG +GYF TFTDDF+RYGY+YLMRH SESF+ FK+F NEV+N LGK IK +RSDRGG
Sbjct: 485 STARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGG 544
Query: 434 EYLSQEFDDHLRSCGIISQLTPPGTPQMNGVSERRNRTLLDMVRSMMSLANLPNTFWGYA 493
EYLS EF +HL+ CGI+ QLTPPGTPQ NGVSE RNRTLLDMVRSMMS NL +FWGYA
Sbjct: 545 EYLSLEFGNHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYA 604
Query: 494 LETAAFTLNRAPSKAVEKTPYELWFGKIPKLSFLKVWGCEVYVKRLQGDKLAPKSDKCLF 553
LET AFTLN PSK+V+KTPYE+W GK P LSFLK+WGCEVYVKRLQ DKL PKSDKC F
Sbjct: 605 LETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFF 664
Query: 554 VGYPKETRGYYFYHESENKVFVARDGVFLEKEFLSKQTSGRNVDIDEIRYEQQINTDIE 612
VGYPKET+GYYFY++ E KVFVAR GVFLEKEF+S++ G + R + + TD++
Sbjct: 665 VGYPKETKGYYFYNQEEGKVFVARHGVFLEKEFISRKDIGSMLWKHRFREDPKKKTDVD 723
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 4/137 (2%)
Query: 7 FNLCSILDEDKLNMDNFLDWEKRLRSVLKSTNKESVLDTPIPKITANSKIEEQKQAKSIR 66
FNL SIL+++KL N +DW + LR VL+ +KE VL P P N+ Q++ R
Sbjct: 9 FNLRSILEKEKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHEKR 68
Query: 67 MKS-ISVTCLMLATMEPNLQKRFRKMDAHTIIRRLRDMSRNKSRLRKYGTSK---AIRRG 122
+ ++CLMLATM P LQ+++ +DAHTII LR+M +++R +++ TSK A R
Sbjct: 69 CNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSLFACRLA 128
Query: 123 IGMSESKKELQLIQKNK 139
G S +++I N+
Sbjct: 129 EGNPVSPHVIKMIGYNE 145