BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0070.1
(382 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 586 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 554 0.0
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 530 e-174
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 586 bits (1510), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 287/430 (66%), Positives = 332/430 (77%), Gaps = 56/430 (13%)
Query: 1 MLKSIRIILAIAAHYDYEIWQMDVKTAFLNGHLEEDVYMTQPEGFVDSINAGKVCKLKKS 60
MLKSIRIILAIAA++DYEIWQMDVKTAFLNG+L EDVYM QP+GFVD + GK+CKL+KS
Sbjct: 884 MLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKS 943
Query: 61 IYGLKQASRSWNLRFDEKIKEFGFLKNAEESCVYKKVSGSDLVFLVLYVDDILIIGNNIP 120
IYGLKQASRSWN+RFDE IK FGF+KN EE+CVYKKVSGS +VFL+LYVDDIL+IGN+IP
Sbjct: 944 IYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIP 1003
Query: 121 MLESVKDWLRKCFSMKDLGEAEYILGIKLYRDRSRRMIGLSQETYIDKILQRFEMTNSKR 180
MLESVK L+ FSMKDLGEA YILGI++YRDRS+R+IGLSQ TYIDK+L+RF M +SK+
Sbjct: 1004 MLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKK 1063
Query: 181 GFLPMSHG---------QAH---------------------------------------- 191
GFLPMSHG Q H
Sbjct: 1064 GFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQ 1123
Query: 192 -------WHAAKNILKYLKRTKDHFLVYGGEDTLKVVGHVDASFQTDRDDFKSQSGFVYC 244
W A KNILKYL+RTKD FLVYGGE+ L V G+ DASFQTD+DD++SQSGFV+C
Sbjct: 1124 SDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFC 1183
Query: 245 LNGGVVCWKSSKQRTVADSTTEAEYLAASEAAKEGVWIKKFLIELGVVPGMEEGVTLYCD 304
LNGG V WKSSKQ TVADSTTEAEY+AASEAAKE VWIKKF+ ELGV+ ++LYCD
Sbjct: 1184 LNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCD 1243
Query: 305 NNGAIAQAKEPRAHQKSKHIQRKYHLIREIIERKDVVICKVHTDDNVADPLTKPLPQPKH 364
N+GAIAQAKEPR+HQKSKHI R+YHLIREI++R DV ICKVHTD N+ADPLTKPLPQPKH
Sbjct: 1244 NSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKH 1303
Query: 365 DSHMRDIGIK 374
++H R +GI+
Sbjct: 1304 EAHTRAMGIR 1313
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 554 bits (1427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 273/432 (63%), Positives = 318/432 (73%), Gaps = 56/432 (12%)
Query: 1 MLKSIRIILAIAAHYDYEIWQMDVKTAFLNGHLEEDVYMTQPEGFVDSINAGKVCKLKKS 60
MLKSIRI+LA AAHYDYEIWQMDVKTAFLNG+LEE VYMTQPEGF A KVCKL +S
Sbjct: 531 MLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRS 590
Query: 61 IYGLKQASRSWNLRFDEKIKEFGFLKNAEESCVYKKVSGSDLVFLVLYVDDILIIGNNIP 120
IYGLKQASRSWNLRF+E IKEF F++N EE CVYKK SGS + FLVLYVDDIL++GN+IP
Sbjct: 591 IYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIP 650
Query: 121 MLESVKDWLRKCFSMKDLGEAEYILGIKLYRDRSRRMIGLSQETYIDKILQRFEMTNSKR 180
+L+SVK WL CFSMKD+GEA YILGI++YRDR ++IGLSQ+TYIDK+L RF M +SK+
Sbjct: 651 LLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKK 710
Query: 181 GFL-------------PMSH---------------------------------------- 187
GF+ P +H
Sbjct: 711 GFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQ 770
Query: 188 ---GQAHWHAAKNILKYLKRTKDHFLVYGGEDTLKVVGHVDASFQTDRDDFKSQSGFVYC 244
G++HW +NI KYL+RTKD FLVYGG + L V G+ DASFQTD+DDF+SQSGF +C
Sbjct: 771 SDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFC 830
Query: 245 LNGGVVCWKSSKQRTVADSTTEAEYLAASEAAKEGVWIKKFLIELGVVPGMEEGVTLYCD 304
LNGG V WKS+KQ TVADSTTEAEY+AASEAAKE VWI+KF+ ELGVVP + + LYCD
Sbjct: 831 LNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCD 890
Query: 305 NNGAIAQAKEPRAHQKSKHIQRKYHLIREIIERKDVVICKVHTDDNVADPLTKPLPQPKH 364
NNGAIAQAKEP++HQKSKHIQR+YHLIREII+R DV I +V TD NVAD TKPLPQPKH
Sbjct: 891 NNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKH 950
Query: 365 DSHMRDIGIKRI 376
+SH IGI+ I
Sbjct: 951 ESHTTAIGIRFI 962
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 530 bits (1365), Expect = e-174, Method: Compositional matrix adjust.
Identities = 267/434 (61%), Positives = 308/434 (70%), Gaps = 56/434 (12%)
Query: 1 MLKSIRIILAIAAHYDYEIWQMDVKTAFLNGHLEEDVYMTQPEGFVDSINAGKVCKLKKS 60
MLKSIRIILAIAA++DYEIWQMDVKTAFLNG L EDVYMTQPEGFVD NA KVCKL+KS
Sbjct: 880 MLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKS 939
Query: 61 IYGLKQASRSWNLRFDEKIKEFGFLKNAEESCVYKKVSGSDLVFLVLYVDDILIIGNNIP 120
IYGLKQASRSWN+RFDE+IK FGF+KN EE CVY KVSGS LV L+LYVDDIL+IGN+IP
Sbjct: 940 IYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIP 999
Query: 121 MLESVKDWLRKCFSMKDLGEAEYILGIKLYR----------------------------- 151
MLESVK L+ FSMKDLGEA YILGIK+YR
Sbjct: 1000 MLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQNTKK 1059
Query: 152 --------------------DRSRRMIGLSQETYIDKILQRFEMTNSKRGF-------LP 184
D RM G+ + I I+ T +
Sbjct: 1060 GFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQ 1119
Query: 185 MSHGQAHWHAAKNILKYLKRTKDHFLVYGGEDTLKVVGHVDASFQTDRDDFKSQSGFVYC 244
G+ HW A KNILKYL+RTKD FL+YGG++ L V G+ DASFQTD+DD++SQSGFV+
Sbjct: 1120 ADPGECHWTAVKNILKYLRRTKDAFLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFI 1179
Query: 245 LNGGVVCWKSSKQRTVADSTTEAEYLAASEAAKEGVWIKKFLIELGVVPGMEEGVTLYCD 304
LNGG V WKSSKQ TVADSTT+AEY+AASEAAKEGVWI+ F+ ELGVVP + LYCD
Sbjct: 1180 LNGGAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCD 1239
Query: 305 NNGAIAQAKEPRAHQKSKHIQRKYHLIREIIERKDVVICKVHTDDNVADPLTKPLPQPKH 364
NNGAIAQAKEPR+HQKSKHI R+YHLIRE+++R DV ICK+HTD NVADPLTKPL QPKH
Sbjct: 1240 NNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKH 1299
Query: 365 DSHMRDIGIKRIGE 378
++H R IGI+ + +
Sbjct: 1300 EAHTRAIGIRYLND 1313