BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0930.1
(148 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AFP55574.1 non-ltr retroelement reverse transcriptase [Rosa rugosa] 157 1e-41
XP_009349611.1 PREDICTED: uncharacterized protein LOC103941142 [... 153 3e-40
XP_010682145.1 PREDICTED: uncharacterized protein LOC104897032 [... 142 4e-39
>AFP55574.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 157 bits (396), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%)
Query: 8 FGLKLDMSKAFDRIEWNFLTDIMSKLGYSEHWIKMITQCISTSSMAVLVNGRPGPIFYPS 67
FGLKLDM+KA+DR+EWNFL ++ K+G+ + WI ++ C++TSS++VL+NG+PGP F PS
Sbjct: 1180 FGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGPSFLPS 1239
Query: 68 RGIRQGDPLSPFLFTLAMEAFSRLINAEHDENKFIGFPTNNPNLNISHLLFADDCIIFGR 127
RG+RQGDPLSPFLF + SR+IN ++ NL +SHL FADD + F R
Sbjct: 1240 RGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDSLFFLR 1299
Query: 128 NNLDNIHTLKTILKIFCEASG 148
L N TL +L +C ASG
Sbjct: 1300 ATLQNCETLSDLLHTYCIASG 1320
>XP_009349611.1 PREDICTED: uncharacterized protein LOC103941142 [Pyrus x
bretschneideri]
Length = 1468
Score = 153 bits (386), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/140 (49%), Positives = 90/140 (64%)
Query: 9 GLKLDMSKAFDRIEWNFLTDIMSKLGYSEHWIKMITQCISTSSMAVLVNGRPGPIFYPSR 68
G+KLDM KA+DR+EW+FL +M K+G+ W ++ C+ T +A+L+NG+PG F PSR
Sbjct: 1201 GVKLDMHKAYDRVEWDFLEAVMEKMGFCLQWRNLVMGCVKTVELAILLNGQPGKSFIPSR 1260
Query: 69 GIRQGDPLSPFLFTLAMEAFSRLINAEHDENKFIGFPTNNPNLNISHLLFADDCIIFGRN 128
GIRQGDPLSP+LF L E +RLI E + + G NN ISHL FADD +IF R
Sbjct: 1261 GIRQGDPLSPYLFILVGEVLARLIQQEVERRRLTGIQLNNGCPTISHLFFADDTLIFMRA 1320
Query: 129 NLDNIHTLKTILKIFCEASG 148
+ N L IL +C ASG
Sbjct: 1321 DQQNCVCLLRILDAYCRASG 1340
>XP_010682145.1 PREDICTED: uncharacterized protein LOC104897032 [Beta vulgaris
subsp. vulgaris]
Length = 305
Score = 142 bits (358), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 2 KGATRYFGLKLDMSKAFDRIEWNFLTDIMSKLGYSEHWIKMITQCISTSSMAVLVNGRPG 61
KG + +KLDM KA+DR+EW+++ + KLG+ E W+ + QCI+T S +V VNG PG
Sbjct: 158 KGREGWVAIKLDMEKAYDRLEWSYVLACLRKLGFCEKWVSWVEQCITTVSFSVPVNGIPG 217
Query: 62 PIFYPSRGIRQGDPLSPFLFTLAMEAFSRLI-NAEHDENKFIGFPTNNPNLNISHLLFAD 120
+F PSRGIRQGDPLSP++F L E +RL+ A + K IG + NI L FAD
Sbjct: 218 DMFCPSRGIRQGDPLSPYIFILCAEMLARLLFQASIEAPKLIGVTLGHSRCNIPFLTFAD 277
Query: 121 DCIIFGRNNLDNIHTLKTILKIFCEASG 148
D +IF + +++ +K+IL+ +C SG
Sbjct: 278 DTMIFAKAKMESCTAIKSILEKYCLMSG 305