BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1470.1
(520 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 411 e-133
KYP59893.1 Retrovirus-related Pol polyprotein from transposon TN... 377 e-121
KYP46254.1 Retrovirus-related Pol polyprotein from transposon TN... 358 e-114
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 411 bits (1057), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/546 (41%), Positives = 328/546 (60%), Gaps = 56/546 (10%)
Query: 20 GKKPGDMSDEDWEELDLEARATIMLCLERDVAFLVDGEKTTASVWLKLENNFMTKILTNR 79
KKP +M+DE W+ELD +A + I LCL ++V V E T A++WLKLE+ +MTK L N+
Sbjct: 42 AKKPVNMTDEQWDELDEKALSAIQLCLSKEVLREVANETTAAALWLKLESLYMTKSLANK 101
Query: 80 VYLKSKLFTCRMEEGFSIQEYVNRSDRIISDLKDIDVKVEDEDQALILLLSLPKSYENLV 139
+ LK +L+T RM EG IQ ++N + II DL++I++K++DED+A++L++SLP +Y++
Sbjct: 102 LRLKERLYTIRMVEGTPIQSHLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFK 161
Query: 140 QTLMLV-GDSISMEETRNSLLADDLRKVATSSMTSGEVDKDQAQWLFATRGRSNERGKGK 198
+ ++ D++S E+ +++LL+ + + S GE + RGR+ E+G
Sbjct: 162 EIMLYSNNDTLSFEDVKSNLLSKEKFDLDIHSEDKGEG--------LSVRGRTQEKGSTS 213
Query: 199 GGKSRSKSRG-SFKKTCFSCGELGHFKASCPKRKLNQKNERYKEKQEMQEAGYVSEDTDE 257
KSRSKSRG KTC C + GH + C L +K ER ++ + EA V D+D
Sbjct: 214 NKKSRSKSRGRKSNKTCRYCKKFGHDISDC--FILKKKQERQEKGKNPAEAANVETDSDG 271
Query: 258 CFSVTEVSEEFS-GKWMLDSGASHHMCPNRKWFTTYRSIDSGTVIMGNDNICKTVGLETI 316
++ S++ S +W+LDSG + HMCP + FTT +DSG V+MGND CK G+ TI
Sbjct: 272 DVMISVSSDKRSKTEWILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTI 331
Query: 317 RIKMHNGVVRTLTDVRHIPDLRKNLISLGVLERNG-KIIIENDSIKVVKGSLVVMRGTRY 375
+IK H+G ++TL++VR IPDL++NLISLG LE G K E +KV KG++V+++ R
Sbjct: 332 QIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRI 391
Query: 376 GNLYKLLGTTITGDVAVRISGRDPTACTGLWHMRLGHMSEKGLSLMYGKGLLKDMKKPCM 435
G+LY L G+ +TG AV S D A T LWHMRLGHMSEKG+ L+ +GLL + +
Sbjct: 392 GSLYILQGSIVTGSAAVSSSMSDKDA-TKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKL 450
Query: 436 EFCEHCVFGKAHRVTFSSSMHRSK------------------------------------ 459
EFCEHCVFGK RV+FS++ HR+K
Sbjct: 451 EFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKV 510
Query: 460 -----EHKNKVFYTFLVWKAMVENKTGRKLKTLRSDNGTEYTDGAFKEFCNQEGIVRHWT 514
HKN+ F TF WK +VE +TG+K+K LR+DNG E+ +G F EFC GI RH T
Sbjct: 511 WVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKT 570
Query: 515 VVNTPQ 520
+ PQ
Sbjct: 571 IPGKPQ 576
>KYP59893.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 377 bits (969), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/553 (38%), Positives = 322/553 (58%), Gaps = 61/553 (11%)
Query: 10 NLAKITETLTGKKPGDMSDEDWEELDLEARATIMLCLERDVAFLVDGEKTTASVWLKLEN 69
N+AK E KP + +ED E + +A + I+L L +V + V ++T + +WLKLE
Sbjct: 23 NIAKSEE-----KPTSVKNEDLAEQEEKAHSLILLSLSDEVLYEVADQETASGLWLKLEK 77
Query: 70 NFMTKILTNRVYLKSKLFTCRMEEGFSIQEYVNRSDRIISDLKDIDVKVEDEDQALILLL 129
+MTK + N++ LK +LF M+E +Q++++ + I+ +L+DI+VK+EDED A+ILL
Sbjct: 78 LYMTKSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELRDINVKIEDEDAAMILLA 137
Query: 130 SLPKSYENLVQTLMLVGDSISMEETRNSLLADDLRKVATSSMTSGEVDKDQAQWLFATRG 189
SLP SYE+ V +L + + I+MEE ++SL + +LR A S + L A
Sbjct: 138 SLPPSYESFVNSLSVGKECITMEEVKSSLHSRELRFKA-----SANSEGVNGAGLLAFNS 192
Query: 190 RSNERGKGKGGKSRSKSRGSFKKTCFSCGELGHFKASCPKRKLNQKNERYKEKQEMQEAG 249
+N GK K + + K++ + + C C E GH+K CPK++ NQK+ +++
Sbjct: 193 TTN--GKKKKEQGKKKTKVNPRDICNYCKEPGHWKKDCPKKR-NQKSVVVAAQED----- 244
Query: 250 YVSEDTDECFSVTEVSEEFSGKWMLDSGASHHMCPNRKWFTTYRSIDSGTVIMGNDNICK 309
S + + S+ + + F +W+LDSG S+HMCPNR WF TY G V MGND CK
Sbjct: 245 -SSFENELVLSIVDNHQHFVEQWVLDSGCSYHMCPNRSWFLTYEKKFGGDVFMGNDMACK 303
Query: 310 TVGLETIRIKMHNGVVRTLTDVRHIPDLRKNLISLGVLERNG-KIIIENDSIKVVKGSLV 368
T+ + TI+IKMH+GV+RTLT+VRH+PDL+KNLIS+GVL+ G K +E +++ KGS +
Sbjct: 304 TISIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNVEGGVMEINKGSTI 363
Query: 369 VMRGTRYGNLYKLLGTTITGDVAVRISGRDPTACTGLWHMRLGHMSEKGLSLMYGKGLLK 428
V+RG + GNLY L G+T ++ ++ + T LWHMRLGHMSE+G+ ++ + LL+
Sbjct: 364 VIRGIKKGNLYMLQGSTNLISESISVADKHTLDLTRLWHMRLGHMSERGMMVLSKQKLLR 423
Query: 429 DMKKPCMEFCEHCVFGKAHRVTFSSSMHRSK----------------------------- 459
D ++FCEHCV GK HR F + H +K
Sbjct: 424 DHTVKELKFCEHCVLGKHHRSKFPKAQHTTKSTLDYVHSNCWGPSRVPSLGGGRYFLSII 483
Query: 460 ------------EHKNKVFYTFLVWKAMVENKTGRKLKTLRSDNGTEYTDGAFKEFCNQE 507
+HKN+ F F WK +VEN+TG+++K LR+DN E+ F ++C +E
Sbjct: 484 DDYSRMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNSLEFCSAEFNDYCKKE 543
Query: 508 GIVRHWTVVNTPQ 520
GIVR +TV NTPQ
Sbjct: 544 GIVRQYTVRNTPQ 556
>KYP46254.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 358 bits (919), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/517 (39%), Positives = 302/517 (58%), Gaps = 56/517 (10%)
Query: 46 LERDVAFLVDGEKTTASVWLKLENNFMTKILTNRVYLKSKLFTCRMEEGFSIQEYVNRSD 105
L +V + V ++T + +WLKLE +MTK + N++ LK +LF M+E +Q++++ +
Sbjct: 2 LSDEVLYEVANQETASGLWLKLEKLYMTKSICNKLLLKRRLFGLHMKEDTPLQDHLDELN 61
Query: 106 RIISDLKDIDVKVEDEDQALILLLSLPKSYENLVQTLMLVGDSISMEETRNSLLADDLRK 165
I+ +L+ IDVK+EDED A+ILL SLP SYE+ V +L + + I+MEE ++SL + +L
Sbjct: 62 SILMELRYIDVKIEDEDAAMILLASLPPSYESFVNSLTVGKECITMEEVKSSLHSRELWF 121
Query: 166 VATSSMTSGEVDKDQAQWLFATRGRSNERGKGKGGKSRSKSRGSFKKTCFSCGELGHFKA 225
A S + L A S + GK K + + K++ + + C C E GH+K
Sbjct: 122 KA-----SANSEGVNGAGLLAFN--STKNGKKKKEQGKKKTKVNPRDICNYCKEPGHWKK 174
Query: 226 SCPKRKLNQKNERYKEKQEMQEAGYVSEDTDECFSVTEVSEEFSGKWMLDSGASHHMCPN 285
CPK++ NQK+ +++ S + + S+ + + + +W+LDSG S+HMCPN
Sbjct: 175 DCPKKR-NQKSVAVAAQEDS------SFENELVLSIVDNHQHSAEQWVLDSGCSYHMCPN 227
Query: 286 RKWFTTYRSIDSGTVIMGNDNICKTVGLETIRIKMHNGVVRTLTDVRHIPDLRKNLISLG 345
R WF TY G V MGND CKT+G+ TI+IKMH+GV+RTLT+VRH+PDL+KNLIS+G
Sbjct: 228 RSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVG 287
Query: 346 VLERNG-KIIIENDSIKVVKGSLVVMRGTRYGNLYKLLGTTITGDVAVRISGRDPTACTG 404
VL G K +E +++ KGS VV+RG + GNLY L G+T +V ++ + T
Sbjct: 288 VLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGSTNLISESVSVADKHTPDLTH 347
Query: 405 LWHMRLGHMSEKGLSLMYGKGLLKDMKKPCMEFCEHCVFGKAHRVTFSSSMHRSK----- 459
LWHMRLGHMSE+G+ ++ + LL D ++FCEHCV GK HR+ F + H +K
Sbjct: 348 LWHMRLGHMSERGMMVLRKQKLLGDHTVKELKFCEHCVVGKHHRIKFPKAQHTTKSTLDY 407
Query: 460 ------------------------------------EHKNKVFYTFLVWKAMVENKTGRK 483
+HKN+ F F WK +VEN+TG++
Sbjct: 408 VHSDCWGPSRVPSLGGGRYFLSIIDDYSGMTWIFIMKHKNQAFKYFKEWKILVENQTGKR 467
Query: 484 LKTLRSDNGTEYTDGAFKEFCNQEGIVRHWTVVNTPQ 520
+K LR+DNG E+ F ++C +EGIVR +TV NTPQ
Sbjct: 468 IKRLRTDNGLEFCSAEFNDYCKKEGIVRQYTVRNTPQ 504