BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1510.1
(205 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABG22123.1 polyprotein, partial [Prunus avium] 293 2e-97
JAT65344.1 Retrovirus-related Pol polyprotein from transposon TN... 292 3e-96
KYP63307.1 Retrovirus-related Pol polyprotein from transposon TN... 279 2e-91
>ABG22123.1 polyprotein, partial [Prunus avium]
Length = 276
Score = 293 bits (749), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 138/208 (66%), Positives = 168/208 (80%), Gaps = 4/208 (1%)
Query: 2 EFEMKDMGAAKKLLGMEIKRERSSKKLYLNQKGYIERVVFRFEM-QNAKAVTTPLAPHFR 60
EFEMKD+G A+K+LGMEI+R+R+ K+ L QK Y+++V+ RF M +N+K V+TPLAPHF+
Sbjct: 25 EFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQRFGMNENSKPVSTPLAPHFK 84
Query: 61 LSGRQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPDFSQAVSVVSRFMANPGKTHWEA 120
LS SP T E +M ++PYASAVGSLMYAMVCTRPD SQAVS+VSR+M NPGK HW+A
Sbjct: 85 LSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVSRYMHNPGKGHWQA 144
Query: 121 VKWVLRYLKGTVDTGLYFNGDTCQ---VSGYVDSDYAGDLDRRRSVTGYVFRVHGAPVSW 177
VKW+LRY+ GTVD GL F D V GYVDSDYAGDLD+RRS TG+VF + G PVSW
Sbjct: 145 VKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAGDLDKRRSTTGFVFTIAGGPVSW 204
Query: 178 RSMLQSTVALSTTEAEYMAMAEGVKEAL 205
RS+LQSTVALSTTEAEYMA+ E +KEA+
Sbjct: 205 RSILQSTVALSTTEAEYMAVTEAIKEAI 232
>JAT65344.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 346
Score = 292 bits (747), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 137/204 (67%), Positives = 168/204 (82%)
Query: 2 EFEMKDMGAAKKLLGMEIKRERSSKKLYLNQKGYIERVVFRFEMQNAKAVTTPLAPHFRL 61
EFEMKD+GAAKK+LGMEI+R R + KL+L Q Y+++V+ RF+M +AK V+TPLA HF+L
Sbjct: 51 EFEMKDLGAAKKILGMEIQRNRGAGKLFLTQARYVQKVLQRFDMWDAKPVSTPLAVHFKL 110
Query: 62 SGRQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPDFSQAVSVVSRFMANPGKTHWEAV 121
S SP +T E+ +M RVPY+SAVGSLMYAMVCTRPD SQAVSVVSR+M+NPGK HW+AV
Sbjct: 111 SASLSPQSTDEEVYMSRVPYSSAVGSLMYAMVCTRPDISQAVSVVSRYMSNPGKVHWQAV 170
Query: 122 KWVLRYLKGTVDTGLYFNGDTCQVSGYVDSDYAGDLDRRRSVTGYVFRVHGAPVSWRSML 181
KW+ RYLKGTV+T L F ++ +SGYVDSD+AGDLDRRRS+TGYVF V G VSW++ L
Sbjct: 171 KWIFRYLKGTVNTCLEFGRNSDILSGYVDSDFAGDLDRRRSLTGYVFSVGGCAVSWKATL 230
Query: 182 QSTVALSTTEAEYMAMAEGVKEAL 205
Q TVALSTTE E+MA E VKEA+
Sbjct: 231 QPTVALSTTETEFMAATEAVKEAM 254
>KYP63307.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 322
Score = 279 bits (713), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 130/206 (63%), Positives = 161/206 (78%), Gaps = 2/206 (0%)
Query: 2 EFEMKDMGAAKKLLGMEIKRERSSKKLYLNQKGYIERVVFRFEMQNAKAVTTPLAPHFRL 61
EFEMK++G A+K+LGMEIKR+R SK LYL+Q+ YI+RV+ RFEM AK V TPLA HF+L
Sbjct: 21 EFEMKELGHARKILGMEIKRKRDSKVLYLSQENYIKRVLDRFEMTAAKPVVTPLAQHFKL 80
Query: 62 SGRQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPDFSQAVSVVSRFMANPGKTHWEAV 121
S Q P T E +M R+PY+SA+GS+MYAMVC RPD + A+SV+SRFMANPGK HWEA+
Sbjct: 81 SKEQEPQTDEELAYMQRLPYSSAIGSIMYAMVCCRPDLTYAMSVISRFMANPGKPHWEAI 140
Query: 122 KWVLRYLKGTVDTGLYF--NGDTCQVSGYVDSDYAGDLDRRRSVTGYVFRVHGAPVSWRS 179
KWVLRYL GT D GL + G ++ G+VDSD+AG +D R+S+TGYVF+V G VSW++
Sbjct: 141 KWVLRYLCGTTDVGLKYISQGGVPEIEGFVDSDFAGSIDTRKSITGYVFKVFGNTVSWKA 200
Query: 180 MLQSTVALSTTEAEYMAMAEGVKEAL 205
LQ VALS+TEAEYMA E VKEAL
Sbjct: 201 NLQGVVALSSTEAEYMAACEAVKEAL 226