BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g1580.1
(458 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GAU49932.1 hypothetical protein TSUD_408340 [Trifolium subterran... 491 e-160
AAX92916.1 retrotransposon protein, putative, Ty1-copia sub-clas... 458 e-152
ABF97861.1 retrotransposon protein, putative, Ty1-copia subclass... 459 e-152
>GAU49932.1 hypothetical protein TSUD_408340 [Trifolium subterraneum]
Length = 1164
Score = 491 bits (1265), Expect = e-160, Method: Compositional matrix adjust.
Identities = 240/486 (49%), Positives = 317/486 (65%), Gaps = 53/486 (10%)
Query: 4 IPLKNKNVTPFELWFKRKPNFSRLKVWGCLAYIRKPDPKRPKLGVRAYTCAFIGYSHNSV 63
+P ++ + +E+ KR+PN S L+ WGCLAY+RKPDPKR KL RAY C FIGY+ NS
Sbjct: 467 VPKSKRSESAYEILKKRQPNLSYLRTWGCLAYVRKPDPKRVKLASRAYECVFIGYAANSK 526
Query: 64 TYRFLNLDTFEIIESVDVEFFEHLTRSSANDNSIVDPINLSNSESVISGNNMDENPKSRE 123
YRF +L+ IIES D +F+E+ + ++ + N+ S V + N +S +
Sbjct: 527 AYRFYDLNEKVIIESNDADFYENKFPFKSRNSGATEQDNIPESSHV----PVIPNAESND 582
Query: 124 PPELEPKRGKRARTERSFGPDFITYLIEGDRSEVTDVTKFVLNIDNDPISFSEAMNSRDC 183
E E +R KR R + +GPD+ Y ++ DP + EA++S+D
Sbjct: 583 EVETELRRSKRVRVAKDYGPDYAAY-----------------TLNEDPANLQEALSSKDA 625
Query: 184 SFWKEAINDEMNSILSNQTWVLSDLPPGAKPIGCRWIFKKKLNPDGSINKFKARLVAKGF 243
W+EAINDEM+S+ SN+TW L D PPG KPIGC+WI KKKL PDG++ K+KARL+AKGF
Sbjct: 626 DLWQEAINDEMDSLESNKTWHLVDFPPGCKPIGCKWILKKKLKPDGTVEKYKARLLAKGF 685
Query: 244 KQRHGIDYFDTYAPVARISSIRVLIALASVHHLVIHQMDMKTTFLNGDLEDEVYMEQPEG 303
+QR ID+FDT++PV RI+SIRV I++A++++L++HQMD+KT FLNGDLE+E+YMEQPEG
Sbjct: 686 RQRENIDFFDTFSPVTRITSIRVFISIATLYNLIVHQMDVKTAFLNGDLEEEIYMEQPEG 745
Query: 304 FISPGQEKKSLQVDK--------------------------------CIYCKVNKSSCVL 331
F+ GQE K ++DK CIY K + + C +
Sbjct: 746 FVIHGQETKVCKLDKSLYGLKQAPKQWHEKFDNLMVSNGFRLNESDNCIYYKCDGNICTI 805
Query: 332 ICLYVDDMLIFGSNLSSVEEIKKFLSSKFDMKDLGVADVILGIKILRKNNVLALSQTHYI 391
ICLYVDDMLIFGSNLS+V +K L + FDMKDLG A VILGIKI R ++L Q+HY+
Sbjct: 806 ICLYVDDMLIFGSNLSAVNNVKSLLGNNFDMKDLGEASVILGIKITRSEKWISLDQSHYV 865
Query: 392 EKILKRYDHFDHKPAPTPMDPSIKLLKNTGRAQAQLEYASVIGSLMYAMHCTRPDIAYAV 451
EKILK+Y +FD KPA TP DPS+KL KN G + Q EYAS+IGSL YA CTRPDIAY V
Sbjct: 866 EKILKKYGYFDCKPACTPYDPSVKLFKNIGDSVRQTEYASIIGSLRYATDCTRPDIAYVV 925
Query: 452 SVLCRL 457
+LCR
Sbjct: 926 GLLCRF 931
>AAX92916.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 713
Score = 458 bits (1178), Expect = e-152, Method: Compositional matrix adjust.
Identities = 229/501 (45%), Positives = 313/501 (62%), Gaps = 65/501 (12%)
Query: 1 LNRIPLKNKNVTPFELWFKRKPNFSRLKVWGCLAYIRKPDPKRPKLGVRAYTCAFIGYSH 60
LNR+P +NK+ TP+E+W RKP+ S L+ WGCLA + P K+ KLG + C F+GY+H
Sbjct: 23 LNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAH 82
Query: 61 NSVTYRFL-------NLDTFEIIESVDVEFFEHL-----TRSSANDNSIVDPINLSNSES 108
+S+ YRFL ++ I+ES D FFE T S +N S + P +++ E
Sbjct: 83 HSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQ 142
Query: 109 VISGNNMDENPKSREPPELEPKRGKRARTERSFGPDFITYLIEGDRSEVTDVTKFVLNID 168
+ + S E P+R KR RT +SFG DF YL+ D
Sbjct: 143 TEHTHEL----VSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV-----------------D 181
Query: 169 NDPISFSEAMNSRDCSFWKEAINDEMNSILSNQTWVLSDLPPGAKPIGCRWIFKKKLNPD 228
+ P S SEA S D +WKEA+ EM+SI++N TW +++ P G KP+GC+W+FKKKL PD
Sbjct: 182 DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 241
Query: 229 GSINKFKARLVAKGFKQRHGIDYFDTYAPVARISSIRVLIALASVHHLVIHQMDMKTTFL 288
G+I K+KARLVAKG+ Q+ G D+FDTY+PVAR+++IRVL++LA+ H L++HQMD+KT FL
Sbjct: 242 GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 301
Query: 289 NGDLEDEVYMEQPEGFISPGQEKKSL--------------------------------QV 316
NG+L++E+YM+QP+GF+ GQE K +
Sbjct: 302 NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEA 361
Query: 317 DKCIYCKVNKSSCVLICLYVDDMLIFGSNLSSVEEIKKFLSSKFDMKDLGVADVILGIKI 376
DKC+Y + V++CLYVDD+LIFG+NL + E+K FLS FDMKDLGVADVIL IK+
Sbjct: 362 DKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKL 421
Query: 377 LRKNNVLALSQTHYIEKILKRYDHFDHKPAPTPMDPSIKLLKNTGRAQAQLEYASVIGSL 436
+R N + L Q+HY+EKIL R+ + D KP+PTP DPS+ L KN A+ QLEY+ +IGSL
Sbjct: 422 IRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSL 481
Query: 437 MYAMHCTRPDIAYAVSVLCRL 457
MY TRPDI++AVS L R
Sbjct: 482 MYLASATRPDISFAVSKLSRF 502
>ABF97861.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 764
Score = 459 bits (1181), Expect = e-152, Method: Compositional matrix adjust.
Identities = 229/501 (45%), Positives = 313/501 (62%), Gaps = 65/501 (12%)
Query: 1 LNRIPLKNKNVTPFELWFKRKPNFSRLKVWGCLAYIRKPDPKRPKLGVRAYTCAFIGYSH 60
LNR+P +NK+ TP+E+W RKP+ S L+ WGCL + P K+ KLG + C F+GY+H
Sbjct: 54 LNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLTKVNVPITKKRKLGPKTVDCVFLGYAH 113
Query: 61 NSVTYRFL-------NLDTFEIIESVDVEFFEHL-----TRSSANDNSIVDPINLSNSES 108
+S+ YRFL ++ I+ES D FFE T S +N S + P +++ E
Sbjct: 114 HSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQ 173
Query: 109 VISGNNMDENPKSREPPELEPKRGKRARTERSFGPDFITYLIEGDRSEVTDVTKFVLNID 168
+ + S E P+R KR RT +SFG DF YL+ D
Sbjct: 174 TEHTHEL----VSEEDVSEAPRRSKRQRTAKSFGDDFTVYLV-----------------D 212
Query: 169 NDPISFSEAMNSRDCSFWKEAINDEMNSILSNQTWVLSDLPPGAKPIGCRWIFKKKLNPD 228
+ P S SEA SRD +WKEA+ EM+SI++N TW +++ P G KP+GC+W+FKKKL PD
Sbjct: 213 DTPKSISEAYASRDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 272
Query: 229 GSINKFKARLVAKGFKQRHGIDYFDTYAPVARISSIRVLIALASVHHLVIHQMDMKTTFL 288
G+I K+KARLVAKG+ Q+ G D+FDTY+PVAR+++IRVL++LA+ H L++HQMD+KT FL
Sbjct: 273 GTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFL 332
Query: 289 NGDLEDEVYMEQPEGFISPGQEKKSL--------------------------------QV 316
NG+L++E+YM+QP+GF+ GQE K +
Sbjct: 333 NGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEA 392
Query: 317 DKCIYCKVNKSSCVLICLYVDDMLIFGSNLSSVEEIKKFLSSKFDMKDLGVADVILGIKI 376
DKC+Y + V++CLYVDD+LIFG+NL + E+K FLS FDMKDLGVADVIL IK+
Sbjct: 393 DKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKL 452
Query: 377 LRKNNVLALSQTHYIEKILKRYDHFDHKPAPTPMDPSIKLLKNTGRAQAQLEYASVIGSL 436
+R N + L Q+HY+EKIL R+ + D KP+PTP DPS+ L KN A+ QLEY+ +IGSL
Sbjct: 453 IRGENGITLLQSHYVEKILNRFGYIDSKPSPTPYDPSLLLRKNKRIARNQLEYSQIIGSL 512
Query: 437 MYAMHCTRPDIAYAVSVLCRL 457
MY TRPDI++AVS L R
Sbjct: 513 MYLASATRPDISFAVSKLSRF 533