BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2010.1
(518 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP34377.1 Retrovirus-related Pol polyprotein from transposon TN... 324 2e-97
KYP38661.1 Retrovirus-related Pol polyprotein from transposon TN... 311 4e-94
GAU16220.1 hypothetical protein TSUD_298520 [Trifolium subterran... 295 1e-87
>KYP34377.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 938
Score = 324 bits (830), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/266 (61%), Positives = 197/266 (74%), Gaps = 22/266 (8%)
Query: 249 QDDDLTKQRPDTVPPTSAEAPSSDLIGPLASDPSTLNMGTRPPHNQRPTRDRRPPTHLAD 308
QDD+ T + S +APS+D+ S P T H+QRP RRPP HL D
Sbjct: 539 QDDNSTNSQS-----LSEDAPSNDIPSVETSLPPT-------NHSQRP---RRPPHHLKD 583
Query: 309 YDCNNISLPYSNSRSNTPYPLTDSLSVAPFSKDHKIFLTSVLSHKEPTSFKEAMTSPHWR 368
Y CN+I +S T +PL + LS++ S H+ FLT+++ ++EP SF +AM S WR
Sbjct: 584 YVCNHI-------KSTTNFPLANYLSLSNLSNFHQPFLTNIIGNQEPKSFSQAMKSAEWR 636
Query: 369 EAMATEIKALESNNTWTLTHLPVGKKPIGCKWVYKIKFNANGSIERYKARLVAKGYTQVE 428
EAMA EI+ALESNNTW+L LP GK IGCKWVYKIK+ ++GSIERYKA LVAKGYTQ+E
Sbjct: 637 EAMAKEIQALESNNTWSLCPLPQGKSSIGCKWVYKIKYRSDGSIERYKACLVAKGYTQIE 696
Query: 429 ALDYTDTFVPVAKLVTVRVLLSIAAVKGWSLHQLDVNNAFLQGDLDEEVFMKLPPGFSTQ 488
+DY DTF PVAKLVTVR+LLSIAA+K WSLHQLDVNNAFLQGDL+EEV+MKLPPGFS +
Sbjct: 697 GIDYHDTFAPVAKLVTVRLLLSIAAIKNWSLHQLDVNNAFLQGDLNEEVYMKLPPGFSRK 756
Query: 489 GETRVCRLKKSLYGLKQASRQWFSKF 514
GET VC+L KS+YGLKQASRQWFSKF
Sbjct: 757 GETYVCKLHKSIYGLKQASRQWFSKF 782
>KYP38661.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 778
Score = 311 bits (798), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 158/266 (59%), Positives = 191/266 (71%), Gaps = 22/266 (8%)
Query: 249 QDDDLTKQRPDTVPPTSAEAPSSDLIGPLASDPSTLNMGTRPPHNQRPTRDRRPPTHLAD 308
QDD+ T + S +A S+D+ S P T H+Q P RRPP HL D
Sbjct: 253 QDDNSTNSQS-----LSEDASSNDISSTETSLPPT-------NHSQHP---RRPPHHLKD 297
Query: 309 YDCNNISLPYSNSRSNTPYPLTDSLSVAPFSKDHKIFLTSVLSHKEPTSFKEAMTSPHWR 368
Y CN+I +S T +PL + LS++ S H+ FLT+++ ++EP SF +AM S WR
Sbjct: 298 YVCNHI-------KSITNFPLANYLSLSNLSNSHQAFLTNIIDNQEPKSFSQAMKSAEWR 350
Query: 369 EAMATEIKALESNNTWTLTHLPVGKKPIGCKWVYKIKFNANGSIERYKARLVAKGYTQVE 428
EAMA EI+ALESNNTW+L LP GK IGCKWVYKIK+ ++GSIERYKARLVAKGY Q+E
Sbjct: 351 EAMAKEIQALESNNTWSLCPLPQGKSSIGCKWVYKIKYRSDGSIERYKARLVAKGYAQIE 410
Query: 429 ALDYTDTFVPVAKLVTVRVLLSIAAVKGWSLHQLDVNNAFLQGDLDEEVFMKLPPGFSTQ 488
+DY DTF PVAKLV VR+LLSIAA+K WSLHQLDVNN FLQGDL+EEV+MKLPP FS +
Sbjct: 411 GIDYHDTFAPVAKLVIVRLLLSIAAIKNWSLHQLDVNNDFLQGDLNEEVYMKLPPRFSRK 470
Query: 489 GETRVCRLKKSLYGLKQASRQWFSKF 514
GET VC+L K +YGLKQASRQWFSKF
Sbjct: 471 GETYVCKLHKFIYGLKQASRQWFSKF 496
>GAU16220.1 hypothetical protein TSUD_298520 [Trifolium subterraneum]
Length = 801
Score = 295 bits (755), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 141/225 (62%), Positives = 170/225 (75%), Gaps = 5/225 (2%)
Query: 290 PPHNQRPTRDRRPPTHLADYDCNNISLPYSNSRSNTPYPLTDSLSVAPFSKDHKIFLTSV 349
PP + P R R P L DY N I+ + S +PL + S++ S H+ FL ++
Sbjct: 329 PPDRRYPQRIRTPSIRLTDY-VNQIN----HVTSKINFPLENYFSLSNLSSSHRAFLINI 383
Query: 350 LSHKEPTSFKEAMTSPHWREAMATEIKALESNNTWTLTHLPVGKKPIGCKWVYKIKFNAN 409
+ +KEP S+ + + S WREAMA EI+ALESNNTW L LP GK IGCKWVYKIK++++
Sbjct: 384 IDNKEPKSYSQVIQSTEWREAMAKEIQALESNNTWVLCPLPEGKSAIGCKWVYKIKYHSD 443
Query: 410 GSIERYKARLVAKGYTQVEALDYTDTFVPVAKLVTVRVLLSIAAVKGWSLHQLDVNNAFL 469
G+IERYKARLVAKGYTQV+ +DY DTF PVAKLVTVR LLSIAA+K WSLHQLDVNNAFL
Sbjct: 444 GTIERYKARLVAKGYTQVQGIDYHDTFAPVAKLVTVRRLLSIAAIKNWSLHQLDVNNAFL 503
Query: 470 QGDLDEEVFMKLPPGFSTQGETRVCRLKKSLYGLKQASRQWFSKF 514
QGDL EEV+MKLPPGFS +G+ VC+L KS+YGLKQASRQWFSKF
Sbjct: 504 QGDLGEEVYMKLPPGFSHKGKPCVCKLNKSIYGLKQASRQWFSKF 548
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 85/132 (64%), Gaps = 27/132 (20%)
Query: 25 IHHSDSPTTILITPLLSGDNYASWSRGMRMALRAIDKFEFVDGSISKPTTPFESHAWERC 84
IHHSD+P T L+TPLL+ DNY SWSR + MALRA +KF
Sbjct: 34 IHHSDNPATFLVTPLLTVDNYGSWSRAVTMALRAKNKF---------------------- 71
Query: 85 NDLVSSWLVNLVSPDLRQSILYDESAAEIWTNLYDIFHQTNAPKIFQLKRAISSMKQDGF 144
W++N VS ++R SILY E+AA+IWT+L D+ Q+NAPKI QLK++IS++KQ+G
Sbjct: 72 -----GWIINSVSTEIRPSILYAETAAQIWTDLKDLLSQSNAPKINQLKQSISALKQEGM 126
Query: 145 DVSTYFTNLKSL 156
VS YFT LKSL
Sbjct: 127 SVSLYFTQLKSL 138