BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2190.1
(387 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 366 e-114
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 353 e-108
CAD40363.2 OSJNBa0093P23.9 [Oryza sativa Japonica Group] 342 e-106
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 366 bits (940), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/473 (43%), Positives = 269/473 (56%), Gaps = 87/473 (18%)
Query: 1 MKGLKRNGLYVLQGNTVTGSVAVSSPEKEVETTKLWHMWLGHMSERGMAILRKQGLLCRQ 60
+K + LY+LQG+ VTGS AVSS + + TKLWHM LGHMSE+GM +L KQGLL Q
Sbjct: 90 LKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQ 149
Query: 61 KVGKLEFWEHCIFGKQCRVKFSKTVHTTKGTLDYIHSDLWGPSRVSSHGGGRYMSTLIDD 120
+GKLEF EHC+FGKQ RV FS H TKGTLDYIHSDLWGPS+V S+GG RYM T+IDD
Sbjct: 150 GIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDD 209
Query: 121 FSRKV-----------LGTPR----VGETLYGQK------DTTTEWCGGAYEQ------- 152
FSRKV T + + ET G+K D E+C G + +
Sbjct: 210 FSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGI 269
Query: 153 ---------------------TLFERARCMLSNAGL--PKAFWAKAVNTAAYLVNISPCT 189
T+ ERARCMLSNAGL + W +A +TA YL+N SP +
Sbjct: 270 ARHKTIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHS 329
Query: 190 SIECKTLNEVWSGYPAKYENLRIFGCPAYAHVKEGELDRRAKKCIFLGYEPEVKGYRLWN 249
S+ K E+WSG P Y NLRIFGCPAYAHV +G+L RA KCIFLGY E KGYRLW
Sbjct: 330 SLNFKIPEEIWSGNPIDYSNLRIFGCPAYAHVNDGKLAPRAIKCIFLGYASESKGYRLWC 389
Query: 250 PDGKSKKILISRDVTFDELAM------------------------------VEFGIDTPE 279
+ KS+++++SRDVTF+E A+ V +D P
Sbjct: 390 SESKSRRLILSRDVTFNEDALLSSGKQSSVSSSSTNNLQGTSEKVELELKSVAPNVDVPS 449
Query: 280 E--VQPQVDEQAEEDEP--ELVHYSVARNRGRIDIQALERYGIADMVAFALSVGETI-DG 334
+ +D+ +D P + Y++AR+R R I+ RY ++ A+ALS+ + + D
Sbjct: 450 SSTTESSIDDHG-DDHPIQQQEEYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDD 508
Query: 335 GETCTYEEAMRSDESRQWFLAMNEEIESLRKNRAWELAEQPKGQNIFGSKWVF 387
E +Y EA+ +S +W +AMNEEIESL KN W L + PKG+ KW++
Sbjct: 509 VEPASYSEAVSCVDSAKWLVAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIY 561
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 353 bits (907), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/466 (42%), Positives = 267/466 (57%), Gaps = 81/466 (17%)
Query: 1 MKGLKRNGLYVLQGNTVTGSVAVSSPE-KEVETTKLWHMWLGHMSERGMAILRKQGLLCR 59
+KG+ R LY LQG+TVTGS V+S E + + TKLWH+ LGHM ERGM IL K+ LL
Sbjct: 378 LKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAG 437
Query: 60 QKVGKLEFWEHCIFGKQCRVKFSKTVHTTKGTLDYIHSDLWGPSRVSSHGGGRYMSTLID 119
KV LEF EHC+FGK R KF K +H TKGTLDYIHSD WGP RV S GG R+ ++ID
Sbjct: 438 HKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIID 497
Query: 120 DFSR--------------------KVLGTPRVGETLYGQK-DTTTEWCGGAYEQ------ 152
D+SR K+L + G+ + + D E+C ++Q
Sbjct: 498 DYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEG 557
Query: 153 ----------------------TLFERARCMLSNAGLPKAFWAKAVNTAAYLVNISPCTS 190
TL ERARCMLSNAGL + FWA+AV+TA YL+N P T
Sbjct: 558 IARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTG 617
Query: 191 IECKTLNEVWSGYPAKYENLRIFGCPAYAHVKEGELDRRAKKCIFLGYEPEVKGYRLWNP 250
I+CKT E+WSG A Y NL+ FGC AY HV EG+L+ RAKK +F+GY VKG+R+W+P
Sbjct: 618 IQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSP 677
Query: 251 DGKSKKILISRDVTFDELAMVEFGID---TPE--EVQPQVDEQAEEDEPEL--------- 296
K++++SR+V FDE ++ + T E + QV+ Q ++E +L
Sbjct: 678 --AEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQE 735
Query: 297 --------------VHYSVARNRG-RIDIQALERYGIADMVAFALSVGETIDGGETCTYE 341
+H S+A++R R+ ++ RYG DMV +AL V E +D E TY+
Sbjct: 736 PQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYK 795
Query: 342 EAMRSDESRQWFLAMNEEIESLRKNRAWELAEQPKGQNIFGSKWVF 387
EA+ S +S +WF AM +E+ESL KN+ W+L QP G+ I KWVF
Sbjct: 796 EAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVF 841
>CAD40363.2 OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 342 bits (877), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/434 (44%), Positives = 256/434 (58%), Gaps = 59/434 (13%)
Query: 4 LKRNGLYVLQGNTVTGSVA-VSSPEKEVETTKLWHMWLGHMSERGMAILRKQGLLCRQKV 62
+K LY L+G T+ G+VA VS + T LWHM LGHMSE G+A L K+GLL Q +
Sbjct: 235 IKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSI 294
Query: 63 GKLEFWEHCIFGKQCRVKFSKTVHTTKGTLDYIHSDLWGPSRVSSHGGGRYMSTLIDDFS 122
GKL+F EHCIFGK RVKF+ + HTT+G LDY+HSDLWGP+R +S GG RY+ T++DD+S
Sbjct: 295 GKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYS 354
Query: 123 RKVLGTPRVGETLYGQKDTTTEW-----------------------CGGAYE-------- 151
RKV P + Y D EW C ++
Sbjct: 355 RKVW--PYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGI 412
Query: 152 ----------------QTLFERARCMLSNAGLPKAFWAKAVNTAAYLVNISPCTSIECKT 195
+T+ +ARCMLSNAGLPK FWA AV+T YL+N SP +I+ KT
Sbjct: 413 VRHYTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKT 472
Query: 196 LNEVWSGYPAKYENLRIFGCPAYAHVKEGELDRRAKKCIFLGYEPEVKGYRLWNPDGKSK 255
+VWSG+PA Y +LR+FGC AYAHV G+L+ RA KCIFLGY VKGY+LW P+ +K
Sbjct: 473 PIKVWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPE--TK 530
Query: 256 KILISRDVTFDELAMVEFGIDTPEEVQPQVDEQAEEDEPELVHYSVARNRGRIDIQALER 315
K++ISR+V F E M+ D P P E E+ + S+A+++ + + + +R
Sbjct: 531 KVVISRNVVFHESVMLH---DKPSTNVPV--ESQEKASVQFPKRSIAKDKPKRNTKPPQR 585
Query: 316 Y-GIADMVAFALSVGETIDG-GETCTYEEAMRSDESRQWFLAMNEEIESLRKNRAWELAE 373
Y A++VA+ALSV E I+G E TY EA+ SD+ +W M++E+ESL KN WEL +
Sbjct: 586 YIEEANIVAYALSVTEEIEGNAEPSTYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVK 645
Query: 374 QPKGQNIFGSKWVF 387
PK + KW+F
Sbjct: 646 LPKEKKPIRCKWIF 659