BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2220.1
(235 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GAU39803.1 hypothetical protein TSUD_219780 [Trifolium subterran... 337 e-104
GAU41684.1 hypothetical protein TSUD_94050 [Trifolium subterraneum] 337 e-103
KYP39906.1 Retrovirus-related Pol polyprotein from transposon 17... 322 e-103
>GAU39803.1 hypothetical protein TSUD_219780 [Trifolium subterraneum]
Length = 1361
Score = 337 bits (863), Expect = e-104, Method: Compositional matrix adjust.
Identities = 169/259 (65%), Positives = 194/259 (74%), Gaps = 24/259 (9%)
Query: 1 MRLCIDYRKLNKVTVRNKYPLPRIDDLFDQLKGFKWFSKIDLRSGYHQLR------SKTA 54
MRLCIDYR+LNKVT++NKYPLPRIDDL DQL+G FSKIDLRSGYHQ+R SKT
Sbjct: 518 MRLCIDYRQLNKVTIKNKYPLPRIDDLLDQLRGATIFSKIDLRSGYHQIRIRTSDVSKTD 577
Query: 55 FVTRYGSYEFLVMPFGLNNVPAVFMDLMNRVFRDFLDNI------------------GVS 96
F TRYG YEFLVMPFGL N PAVFMD MNR+F+ +LDN GVS
Sbjct: 578 FRTRYGHYEFLVMPFGLTNAPAVFMDYMNRIFQPYLDNKCEFWLSEVKFLGHVISQGGVS 637
Query: 97 VDPSKVEAVLNWKQPASVTEVRSFLGLAGYYKRFIKGFSSIAGPLTNLTKKEVLFRWSTE 156
VDPSKVEAVLNW++P +V+EVRSFLGLAGYY+RFI GFS IA PLT LT+K F W+
Sbjct: 638 VDPSKVEAVLNWERPRTVSEVRSFLGLAGYYRRFILGFSEIALPLTRLTRKGAAFVWNEL 697
Query: 157 CDLAFQELKTRLTTAPVSTIPEGGVWLVIYTDASIQGLGCVLMRSDKVVTYASRQLRPHE 216
C+ +F LK +LT+APV IP+ V+Y DAS +GLGCVLM+ VV YASRQL+PHE
Sbjct: 698 CENSFNLLKQKLTSAPVLVIPDPDKKYVVYCDASNKGLGCVLMQEGTVVAYASRQLKPHE 757
Query: 217 RNYPTHDLELAAIVFALKI 235
NYPTHDLELAAI+FALKI
Sbjct: 758 ENYPTHDLELAAIIFALKI 776
>GAU41684.1 hypothetical protein TSUD_94050 [Trifolium subterraneum]
Length = 2135
Score = 337 bits (865), Expect = e-103, Method: Compositional matrix adjust.
Identities = 166/259 (64%), Positives = 193/259 (74%), Gaps = 24/259 (9%)
Query: 1 MRLCIDYRKLNKVTVRNKYPLPRIDDLFDQLKGFKWFSKIDLRSGYHQLR------SKTA 54
MRLCIDYR+LNKVT++NKYPLPRIDDL DQL+G FSKIDLRSGYH +R SKTA
Sbjct: 1265 MRLCIDYRQLNKVTIKNKYPLPRIDDLLDQLRGATIFSKIDLRSGYHHIRIRTSDVSKTA 1324
Query: 55 FVTRYGSYEFLVMPFGLNNVPAVFMDLMNRVFRDFLDNI------------------GVS 96
F TRYG YEFLVMPFGL N PA+FMD MNR+F+ +LDN GVS
Sbjct: 1325 FRTRYGHYEFLVMPFGLTNAPAIFMDYMNRIFQPYLDNKCEFWLSEVKFLGHMISQGGVS 1384
Query: 97 VDPSKVEAVLNWKQPASVTEVRSFLGLAGYYKRFIKGFSSIAGPLTNLTKKEVLFRWSTE 156
VDPSKVEAVLNW++P +V+E+RSFLGLAGYY+RFI GFS IA PLT LT+K F W
Sbjct: 1385 VDPSKVEAVLNWERPRTVSEIRSFLGLAGYYRRFILGFSEIALPLTRLTRKGAAFVWDEL 1444
Query: 157 CDLAFQELKTRLTTAPVSTIPEGGVWLVIYTDASIQGLGCVLMRSDKVVTYASRQLRPHE 216
C+ +F LK +LT+APV IP+ ++Y DAS +GLGCVLM+ VV YASRQL+PHE
Sbjct: 1445 CENSFNLLKQKLTSAPVLVIPDPDKKYLVYCDASHKGLGCVLMQDGAVVAYASRQLKPHE 1504
Query: 217 RNYPTHDLELAAIVFALKI 235
NYPTHDLELAAI+FALKI
Sbjct: 1505 ENYPTHDLELAAIIFALKI 1523
>KYP39906.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus
cajan]
Length = 666
Score = 322 bits (824), Expect = e-103, Method: Compositional matrix adjust.
Identities = 157/269 (58%), Positives = 194/269 (72%), Gaps = 35/269 (13%)
Query: 2 RLCIDYRKLNKVTVRNKYPLPRIDDLFDQLKGFKWFSKIDLRSGYHQLR------SKTAF 55
RLC+DYR+LNK+T++NKYPLPRIDDL DQL+G FSKIDLRSGYHQ+R KTAF
Sbjct: 44 RLCVDYRQLNKLTIKNKYPLPRIDDLMDQLRGASVFSKIDLRSGYHQIRVKEGDIPKTAF 103
Query: 56 VTRYGSYEFLVMPFGLNNVPAVFMDLMNRVFRDFLDNI---------------------- 93
TRYG YE++VMPFG+ N PAVFMD M+R+FR FLD
Sbjct: 104 RTRYGHYEYIVMPFGVTNAPAVFMDYMSRIFRSFLDKFVAKQLYAMLSKCEFWLDEVKFL 163
Query: 94 -------GVSVDPSKVEAVLNWKQPASVTEVRSFLGLAGYYKRFIKGFSSIAGPLTNLTK 146
G++VDP+KVE+VL W++ +VT+++SF+GLAGYY+RFI+GFS I PLT LT+
Sbjct: 164 GHVISVEGIAVDPAKVESVLQWERLRTVTDIQSFVGLAGYYRRFIEGFSKIVAPLTQLTR 223
Query: 147 KEVLFRWSTECDLAFQELKTRLTTAPVSTIPEGGVWLVIYTDASIQGLGCVLMRSDKVVT 206
KE F W+ C+ +F+ELK RLTT+PV +P+ G +Y DAS QGLGCVLM+ KVV
Sbjct: 224 KEQPFIWTDACERSFEELKRRLTTSPVLVLPDSGEPFDVYCDASHQGLGCVLMQHGKVVA 283
Query: 207 YASRQLRPHERNYPTHDLELAAIVFALKI 235
YASRQL+ HERNYPTHDLELAA+VFALKI
Sbjct: 284 YASRQLKNHERNYPTHDLELAAVVFALKI 312