BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2240.1
(290 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_007037177.1 DNA/RNA polymerases superfamily protein [Theobrom... 408 e-139
XP_007028165.1 Retrotransposon protein, Ty3-gypsy subclass, puta... 403 e-136
XP_007010873.1 Uncharacterized protein TCM_044868 [Theobroma cac... 397 e-135
>XP_007037177.1 DNA/RNA polymerases superfamily protein [Theobroma cacao]
EOY21678.1 DNA/RNA polymerases superfamily protein
[Theobroma cacao]
Length = 448
Score = 408 bits (1049), Expect = e-139, Method: Compositional matrix adjust.
Identities = 188/287 (65%), Positives = 232/287 (80%)
Query: 1 MKKDVAEHVRKCEVCQMVKAENRHPLGLLELLPIPEWKWENISMDFITGLPRSSQGFDAI 60
+K+DVAE V KC VCQ VKAE++ P GLL+ LP+PEWKWE+I+MDF+TGLPR+S G+D+I
Sbjct: 59 LKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSI 118
Query: 61 WVIVDRLTKPAHFLPVKTTDSGDRLTQHCIKEIVRLHGVPVSIVSDRDSSFTSRFWKSFQ 120
W++VDRLTK AHFLPVKTT + + + EIVRLHG+P+SIVSDR + FTSRFW Q
Sbjct: 119 WIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQ 178
Query: 121 ASMGTSLHFSTAFHPQTDGQTERVNKVLEDMLRCSILDLGGSWKDHLPLVEFAYNNSYQS 180
++GT L FSTAFHPQTDGQ+ER + LEDMLR ++DLG W+ +LPLVEFAYNNS+Q+
Sbjct: 179 EALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQT 238
Query: 181 SIGMAPFEALYGRPCRSPLCWTEAGDAKLEGPEVVQDTSEKIALIQSRLQAAQSRQKSYA 240
SI MAPFEALYGR CRSP+ W E G+ KL GPE+VQD +EKI +I+ R+ AQSRQKSYA
Sbjct: 239 SIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYA 298
Query: 241 DKRRRYLEFVGGEEVLLKVSPMKWVLRFGKKEKLAPRYIGPFRIVQR 287
D RRRYLEF G+ V LKVSP K ++RFGKK KL+PRYIGPF I+++
Sbjct: 299 DNRRRYLEFQVGDHVFLKVSPTKGIMRFGKKGKLSPRYIGPFEILEK 345
>XP_007028165.1 Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
cacao] EOY08667.1 Retrotransposon protein, Ty3-gypsy
subclass, putative [Theobroma cacao]
Length = 521
Score = 403 bits (1035), Expect = e-136, Method: Compositional matrix adjust.
Identities = 187/287 (65%), Positives = 229/287 (79%)
Query: 1 MKKDVAEHVRKCEVCQMVKAENRHPLGLLELLPIPEWKWENISMDFITGLPRSSQGFDAI 60
+K+DVAE V KC VCQ VKAE++ P GLL+ LP+PEWKWE+I+MDF+TGLPR+S G+D+I
Sbjct: 132 LKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSI 191
Query: 61 WVIVDRLTKPAHFLPVKTTDSGDRLTQHCIKEIVRLHGVPVSIVSDRDSSFTSRFWKSFQ 120
W++VDRLTK AHFLPVKTT + + + EIVRLHG+P+SIVSDR + FTSRFW Q
Sbjct: 192 WIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQ 251
Query: 121 ASMGTSLHFSTAFHPQTDGQTERVNKVLEDMLRCSILDLGGSWKDHLPLVEFAYNNSYQS 180
++GT L FSTAFHPQTDGQ+ER + LEDMLR ++DLG W+ +LPLVEFAYNNS+Q+
Sbjct: 252 EALGTKLDFSTAFHPQTDGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQT 311
Query: 181 SIGMAPFEALYGRPCRSPLCWTEAGDAKLEGPEVVQDTSEKIALIQSRLQAAQSRQKSYA 240
SI MAPFEALYGR CRSP+ W E G+ KL GPE+VQD +EKI +I+ R+ AQSR KSYA
Sbjct: 312 SIQMAPFEALYGRRCRSPIGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRHKSYA 371
Query: 241 DKRRRYLEFVGGEEVLLKVSPMKWVLRFGKKEKLAPRYIGPFRIVQR 287
D RRR LEF G+ V LKVSP K V+RFGKK KL+PRYIGPF I+ +
Sbjct: 372 DNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKLSPRYIGPFEILDK 418
>XP_007010873.1 Uncharacterized protein TCM_044868 [Theobroma cacao] EOY19683.1
Uncharacterized protein TCM_044868 [Theobroma cacao]
Length = 403
Score = 397 bits (1021), Expect = e-135, Method: Compositional matrix adjust.
Identities = 186/287 (64%), Positives = 228/287 (79%)
Query: 1 MKKDVAEHVRKCEVCQMVKAENRHPLGLLELLPIPEWKWENISMDFITGLPRSSQGFDAI 60
+K+DVAE V KC VCQ VKAE++ P GLL+ LP+PEWKWE+I+MDF+TGLPR+S G+D+I
Sbjct: 14 LKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSI 73
Query: 61 WVIVDRLTKPAHFLPVKTTDSGDRLTQHCIKEIVRLHGVPVSIVSDRDSSFTSRFWKSFQ 120
W++VDRLTK AHFLPVKTT + + + EIVRLHG+P+SIVSDR + FTSRFW Q
Sbjct: 74 WIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQ 133
Query: 121 ASMGTSLHFSTAFHPQTDGQTERVNKVLEDMLRCSILDLGGSWKDHLPLVEFAYNNSYQS 180
++GT L FSTAFHPQT GQ+ER + LEDMLR ++DLG W+ +LPLVEFAYNNS+Q+
Sbjct: 134 EALGTKLDFSTAFHPQTGGQSERTIQTLEDMLRACVIDLGVRWEQYLPLVEFAYNNSFQT 193
Query: 181 SIGMAPFEALYGRPCRSPLCWTEAGDAKLEGPEVVQDTSEKIALIQSRLQAAQSRQKSYA 240
SI MAPFEALYGR CRSP+ W E G+ KL GPE+VQD +EKI +I+ R+ AQSRQKSYA
Sbjct: 194 SIQMAPFEALYGRRCRSPVGWLEVGERKLLGPELVQDATEKIHMIRQRMLTAQSRQKSYA 253
Query: 241 DKRRRYLEFVGGEEVLLKVSPMKWVLRFGKKEKLAPRYIGPFRIVQR 287
D RRR LEF G+ V LKV P K V+RFGKK KL+PRYIGPF I+ +
Sbjct: 254 DNRRRDLEFQVGDHVFLKVLPTKGVMRFGKKGKLSPRYIGPFEILDK 300