BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2490.1
(281 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 241 3e-69
XP_017609417.1 PREDICTED: uncharacterized protein LOC108455356 [... 218 1e-66
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 228 2e-65
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 241 bits (616), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/287 (47%), Positives = 176/287 (61%), Gaps = 18/287 (6%)
Query: 6 FNFRSLLDKEKLNEHNFLDWERNLGIVLRMEGKQHVLETPIP-VLDDNSTKEEIDEERSV 64
F RS+L KEKLN NF DW RNL IVLR + K+HVLE PIP V DN+ +
Sbjct: 96 FALRSILKKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPADNAAATLKSAYKKA 155
Query: 65 RKKAEPVTCLMLATMEPTLQEQFIDMDAYSMMRQLREMFQKQSRLERFETSKAIMDMRLE 124
++ V+CLMLA M LQ+QF +++AY M+ L+ MF+ Q+R +RFE SK + +L
Sbjct: 156 CDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTKRFEISKNLFSCKLA 215
Query: 125 KGKPVGPHVRQLIRLMGKLAKLGFPYSQQTATDTILHSLHSGFNQFKMNYNMNGWDKTLE 184
+G PV PH+ +++ L KLGFP SQ+ ATD IL SL + + QF +N++MNG DK L
Sbjct: 216 EGSPVSPHMIKMVGYTQSLEKLGFPLSQELATDLILASLPASYGQFILNFHMNGLDKNLT 275
Query: 185 ELHSMLLTAEKDVAIVETKKDVLMVQKDKGFKKGGKQKKKTASKGKGKRVA------KPK 238
ELH +L TAE + + + V+MVQK FKK K +T KGKGK+V KPK
Sbjct: 276 ELHMLLKTAEDSIKKINSH--VMMVQKSTSFKK----KARTWVKGKGKKVLDGIQTNKPK 329
Query: 239 DK---GPPPDTKCFYCDGKGHWKRNCPKFLED--KKNGTVASNSGIN 280
K GP + +CFYC GHWKRNC K+L D K GT S SGIN
Sbjct: 330 LKTKSGPTQENECFYCKEPGHWKRNCKKYLADLKKNGGTKPSTSGIN 376
>XP_017609417.1 PREDICTED: uncharacterized protein LOC108455356 [Gossypium
arboreum]
Length = 289
Score = 218 bits (554), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 173/283 (61%), Gaps = 11/283 (3%)
Query: 4 DIFNFRSLLDKEKLNEHNFLDWERNLGIVLRMEGKQHVLETPIP-VLDDNSTKEEIDEER 62
+ + RS+L+ +KLN NFLDW RNL IVL+ E K +V E P+P N+++ + D +
Sbjct: 6 NTLSLRSVLENDKLNGLNFLDWFRNLRIVLKQERKLYVNEQPLPNEPPANASRADRDVYK 65
Query: 63 SVRKKAEPVTCLMLATMEPTLQEQFIDMDAYSMMRQLREMFQKQSRLERFETSKAIMDMR 122
V CLMLATM P LQ+Q DM AY M+ L+E++Q Q+R +RF+ SKA+ +
Sbjct: 66 KHLNDMVDVRCLMLATMNPELQKQHEDMVAYDMIDHLKELYQGQARQKRFDISKALFQCK 125
Query: 123 LEKGKPVGPHVRQLIRLMGKLAKLGFPYSQQTATDTILHSLHSGFNQFKMNYNMNGWDKT 182
+ +G PVGPHV ++IR + L KLGFP SQ+ ATD IL SL ++QF +N+NMN DKT
Sbjct: 126 MAEGSPVGPHVLKMIRYIESLFKLGFPLSQELATDVILQSLPDSYSQFVLNFNMNEIDKT 185
Query: 183 LEELHSMLLTAEKDVAIVETKKDVLMVQKDKGFKKGGKQKKKTA----SKGKGKRVAKPK 238
L +L SML T E ++ V K +LMV+ +KG K QKK + GKGK KPK
Sbjct: 186 LPQLLSMLRTVEGNMKRVRP-KPILMVRNNKGKGKAKVQKKPKGKGRPNSGKGKAALKPK 244
Query: 239 DKGPPPDTKCFYCDGKGHWKRNCPKFLED----KKNGTVASNS 277
G + CF+ GHWKRN P +LE+ K +GT AS +
Sbjct: 245 S-GVSKEGNCFHYGVTGHWKRNYPVYLEEIKKAKASGTSASGT 286
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 228 bits (582), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/285 (47%), Positives = 170/285 (59%), Gaps = 17/285 (5%)
Query: 6 FNFRSLLDKEKLNEHNFLDWERNLGIVLRMEGKQHVLETPIPVLDDNSTKEEIDEERSVR 65
F RS+L+KEKLN NF DW RNL IVLR + K+HVLE PIP D T+ ++
Sbjct: 13 FALRSILEKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIP---DVPTENAAAAIKTAY 69
Query: 66 KKA----EPVTCLMLATMEPTLQEQFIDMDAYSMMRQLREMFQKQSRLERFETSKAIMDM 121
KKA V+CLMLA M LQ+QF +++AY M+ L+ MF+ Q+R ERFE SK +
Sbjct: 70 KKACDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGC 129
Query: 122 RLEKGKPVGPHVRQLIRLMGKLAKLGFPYSQQTATDTILHSLHSGFNQFKMNYNMNGWDK 181
+L +G PV PHV +++ L KLGFP SQ+ ATD IL SL + QF +N++MNG DK
Sbjct: 130 KLAEGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDK 189
Query: 182 TLEELHSMLLTAEKDVAIVETKKDVLMVQKDKGFKKGGKQKKKTASKGKGK---RVAKPK 238
L ELH ML TAE V + V+MVQK FKK K K K K + KPK
Sbjct: 190 NLTELHMMLKTAEGSVK--KCNNHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQTDKPK 247
Query: 239 DK---GPPPDTKCFYCDGKGHWKRNCPKFLEDKK--NGTVASNSG 278
K GP + +CFYC GHWKRNC K+L D+K GT S +G
Sbjct: 248 TKTKSGPTQENECFYCKELGHWKRNCKKYLADQKRNGGTKTSTTG 292