BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2540.1
(145 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AFP55574.1 non-ltr retroelement reverse transcriptase [Rosa rugosa] 123 5e-30
XP_012441961.1 PREDICTED: uncharacterized protein LOC105766967 [... 116 2e-29
XP_002466324.1 hypothetical protein SORBIDRAFT_01g005660 [Sorghu... 121 3e-29
>AFP55574.1 non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 123 bits (309), Expect = 5e-30, Method: Composition-based stats.
Identities = 56/141 (39%), Positives = 89/141 (63%)
Query: 1 MIYNCISSSSMAVLINGHPGPTFHPSRGIRQGDPLFPFLFILAMEGLCRILASNPDNGKF 60
++ +C+++SS++VLING PGP+F PSRG+RQGDPL PFLF+ + L R++ +
Sbjct: 1214 LVMSCVTTSSLSVLINGKPGPSFLPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLL 1273
Query: 61 LGFPTNNPNLTISHLLFANDCIIFGKNSLDNVHNLKAMLNLFCSASGQTINYNKSNIFYS 120
NL +SHL FA+D + F + +L N L +L+ +C ASGQ IN KS+IF+S
Sbjct: 1274 TPVTIGPNNLPVSHLFFADDSLFFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIFFS 1333
Query: 121 KNSHPKFKRIIMKMLKVKYAS 141
N+ P+ ++ ++++ S
Sbjct: 1334 PNTPPEIAHLLSSIMQIPVVS 1354
>XP_012441961.1 PREDICTED: uncharacterized protein LOC105766967 [Gossypium
raimondii]
Length = 249
Score = 116 bits (290), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 86/145 (59%)
Query: 1 MIYNCISSSSMAVLINGHPGPTFHPSRGIRQGDPLFPFLFILAMEGLCRILASNPDNGKF 60
++ CIS+ S V NG G F P+RG+RQGDPL PF+F++ EGL ++ + G
Sbjct: 29 LVMRCISTVSYVVTTNGRSGRVFKPTRGLRQGDPLSPFIFLICSEGLSSLIRNATREGLI 88
Query: 61 LGFPTNNPNLTISHLLFANDCIIFGKNSLDNVHNLKAMLNLFCSASGQTINYNKSNIFYS 120
G + ISHLLFA+DCI+FG+ + +V NLKA+L + + SGQ + + KS IF+S
Sbjct: 89 KGVRASRRGPMISHLLFADDCILFGEATERSVRNLKAILQEYEACSGQYVYFYKSMIFFS 148
Query: 121 KNSHPKFKRIIMKMLKVKYASTSEK 145
N KR I + ++ ++ EK
Sbjct: 149 SNLVEGDKRSISAKMGIRCSTNMEK 173
>XP_002466324.1 hypothetical protein SORBIDRAFT_01g005660 [Sorghum bicolor]
Length = 659
Score = 121 bits (303), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 81/125 (64%)
Query: 1 MIYNCISSSSMAVLINGHPGPTFHPSRGIRQGDPLFPFLFILAMEGLCRILASNPDNGKF 60
+IY CISS+SMAV+ING PGPTFHPSRGIRQG PL P+LFILA+ L L N D +
Sbjct: 119 LIYKCISSTSMAVVINGQPGPTFHPSRGIRQGCPLSPYLFILAVNELATCLQLNSDLHEI 178
Query: 61 LGFPTNNPNLTISHLLFANDCIIFGKNSLDNVHNLKAMLNLFCSASGQTINYNKSNIFYS 120
G I LLFA+D II G+ + + +L+ FC+ASGQT N +KS+I +S
Sbjct: 179 QGISLGPGCPKIHALLFADDLIICGQATKSEASRINHILHSFCAASGQTPNLSKSSIVFS 238
Query: 121 KNSHP 125
K + P
Sbjct: 239 KYTDP 243