BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2590.1
(139 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_009117147.1 PREDICTED: putative ribonuclease H protein At1g65... 91 3e-19
XP_012075485.1 PREDICTED: uncharacterized protein LOC105636752 [... 92 3e-19
XP_013601558.1 PREDICTED: uncharacterized protein LOC106309014 [... 92 5e-19
>XP_009117147.1 PREDICTED: putative ribonuclease H protein At1g65750 [Brassica
rapa]
Length = 316
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 76/140 (54%), Gaps = 5/140 (3%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWWEK--SKAIHTIKWSSICLPRKLGGLGFRLPHLNNQAF 58
M F LPK I + I TL +FWW +K +H W IC+P+K GGLGFR NQA
Sbjct: 71 MSIFRLPKTICEEINTLLANFWWGSGSNKGMHWYSWERICVPKKEGGLGFRDLERFNQAL 130
Query: 59 LRKLAWRMRKNPQAPWATLLKAKYFP-NTINPCPPKQFHYWLWKS-IYKTHQQNPQLELL 116
L K WR+ + P+ A +LKA+Y+P +I K+ ++WKS +Y L L
Sbjct: 131 LSKRVWRLLQQPECLAARILKARYYPEESILTVQSKRKASYVWKSLLYGRDLLIQGLRFL 190
Query: 117 EGRKGTLINIWQDYWIPAHP 136
G GT +++W D W+ HP
Sbjct: 191 IG-NGTTVSMWSDPWLADHP 209
>XP_012075485.1 PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
Length = 1028
Score = 92.4 bits (228), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWW----EKSKAIHTIKWSSICLPRKLGGLGFRLPHLNNQ 56
M F LPK + K I+++ SFWW ++ + I+ I W +C P+ LGGLGFR + N
Sbjct: 560 MNFFLLPKSLCKEIQSIICSFWWGRDMQQRRGINWISWERMCRPKFLGGLGFRRLYEFNL 619
Query: 57 AFLRKLAWRMRKNPQAPWATLLKAKYFPNT-INPCPPKQFHYWLWKSIYKTHQQNPQLEL 115
A + K AWR+ NP + A+LLKAKYFP T +LW+S++++ +
Sbjct: 620 AMVGKQAWRIFMNPTSVVASLLKAKYFPLTNFLESSLGNRPSFLWRSLWESQRVVCAGAC 679
Query: 116 LEGRKGTLINIWQDYWIPA 134
L G+ I+IWQD W+P+
Sbjct: 680 LRVGSGSTISIWQDAWLPS 698
>XP_013601558.1 PREDICTED: uncharacterized protein LOC106309014 [Brassica oleracea
var. oleracea]
Length = 766
Score = 91.7 bits (226), Expect = 5e-19, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 1 MQCFDLPKGIRKSIETLQRSFWWE--KSKAIHTIKWSSICLPRKLGGLGFRLPHLNNQAF 58
M F LPK + I + FWW K +H W + +P++ GGLGF+ + NQA
Sbjct: 605 MNIFPLPKEVCAEINAVLAKFWWGAGDKKGLHWYSWDRVSVPKREGGLGFKDLEIFNQAL 664
Query: 59 LRKLAWRMRKNPQAPWATLLKAKYFP--NTINPCPPKQFHYWLWKSIYKTHQQ-NPQLEL 115
L K WR+ ++P A +LKA+YFP + +N K+ Y WKSI N +
Sbjct: 665 LSKQVWRIMQHPHCLMARILKARYFPEEDILNAKLKKKASY-AWKSILHGRDLINKGMRY 723
Query: 116 LEGRKGTLINIWQDYWIPAHP 136
+ G GTL+N+W D WIP HP
Sbjct: 724 IIG-DGTLVNMWTDPWIPDHP 743