BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g2880.1
(179 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC12735.1 putative retrovirus-related polyprotein, partial [Lit... 205 8e-64
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 193 5e-54
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 186 3e-52
>AAC12735.1 putative retrovirus-related polyprotein, partial [Lithospermum
erythrorhizon]
Length = 244
Score = 205 bits (521), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 105/172 (61%), Positives = 139/172 (80%), Gaps = 1/172 (0%)
Query: 9 ILGDGSICKTMGLGTIRIKIHDGVVRTLTDVRHIPDLRKNLISLGVLEWNRCNIIIENDS 68
++G+ CKT+G+GTIR+K+HDG + TL DVRHI DL KNLISL +LE N C I++E+
Sbjct: 4 LMGNDHACKTVGVGTIRVKMHDGTIITLNDVRHIQDLHKNLISLRLLEKNGCKIVLEDGV 63
Query: 69 IKVVKGSLVVMRGTRYGNLYKILGTIITGDVAVGISG-RDPTASTRLWHMRLGHMSEKSL 127
+KVV+ SLVVM+G +GNLY ++GT++TGD+AVG+ G +D T T +WHMRLGHMSEK L
Sbjct: 64 LKVVRRSLVVMKGVSHGNLYPLVGTMVTGDLAVGVVGHKDQTECTMIWHMRLGHMSEKGL 123
Query: 128 SLMCGKGLLKDMNKPCMEFCEHYVFGKAHRVTFSTSKHMSKEVLDYLHTDVW 179
SL+ G+GLLK+M K CMEFCEH+V+GK HR+ F TSKH S+ +LDY+HTD+W
Sbjct: 124 SLLSGQGLLKNMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLW 175
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 193 bits (491), Expect = 5e-54, Method: Composition-based stats.
Identities = 90/177 (50%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 3 IDGGTVILGDGSICKTMGLGTIRIKIHDGVVRTLTDVRHIPDLRKNLISLGVLEWNRCNI 62
+D G V++G+ + CK G+GTI+IK HDG ++TL++VR IPDL++NLISLG LE C
Sbjct: 14 VDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKY 73
Query: 63 IIENDSIKVVKGSLVVMRGTRYGNLYKILGTIITGDVAVGISGRDPTASTRLWHMRLGHM 122
E +KV KG++V+++ R G+LY + G+I+TG AV S D A T+LWHMRLGHM
Sbjct: 74 SAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDA-TKLWHMRLGHM 132
Query: 123 SEKSLSLMCGKGLLKDMNKPCMEFCEHYVFGKAHRVTFSTSKHMSKEVLDYLHTDVW 179
SEK + L+ +GLL + +EFCEH VFGK RV+FST+ H +K LDY+H+D+W
Sbjct: 133 SEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLW 189
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 186 bits (472), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 90/177 (50%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 3 IDGGTVILGDGSICKTMGLGTIRIKIHDGVVRTLTDVRHIPDLRKNLISLGVLEWNRCNI 62
+D G V++G+ + CK G+GTI+IK HDG ++TL++VR IPDL++NLISLG LE C
Sbjct: 310 VDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKY 369
Query: 63 IIENDSIKVVKGSLVVMRGTRYGNLYKILGTIITGDVAVGISGRDPTASTRLWHMRLGHM 122
E +KV KG++V+++ R G+LY + G+I+TG AV S D A T+LWHMRLGHM
Sbjct: 370 SAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDA-TKLWHMRLGHM 428
Query: 123 SEKSLSLMCGKGLLKDMNKPCMEFCEHYVFGKAHRVTFSTSKHMSKEVLDYLHTDVW 179
SEK + L+ +GLL + +EFCEH VFGK RV+FST+ H +K LDY+H+D+W
Sbjct: 429 SEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLW 485