BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000108.1_g3010.1
         (278 letters)

Database: ./nr 
           95,329,361 sequences; 35,143,497,570 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_003588905.1 transmembrane protein, putative [Medicago truncat...    57   4e-06

>XP_003588905.1 transmembrane protein, putative [Medicago truncatula] AES59156.1
           transmembrane protein, putative [Medicago truncatula]
          Length = 239

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 64/119 (53%), Gaps = 7/119 (5%)

Query: 18  TRSWFFRILTVGIIALMMELTKVSSLEEQNFTPS--LLCISECSTCPVICGSPP--LSSS 73
           T+SWF     +  + L++   +   +E++   PS  LLCISEC TCP IC  PP  L+SS
Sbjct: 11  TKSWFAWTTNIVFMLLVLFANRTLEIEDKVEEPSSGLLCISECVTCPTICSPPPPKLASS 70

Query: 74  PSSPPPPPPPLS--SSPLSLPPPPPPSPSLSLPPIHYPSPLTHQPPPPPTTTKSTPTIP 130
            S+ PPP  P    SSP  L P  PP P ++  P   P  LT  PPPPP  T  +P  P
Sbjct: 71  NSNHPPPSLPTQNPSSPPLLTPNAPPFPLITPHPPSSPL-LTQNPPPPPLLTSYSPPFP 128


Top