BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3010.1
(278 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_003588905.1 transmembrane protein, putative [Medicago truncat... 57 4e-06
>XP_003588905.1 transmembrane protein, putative [Medicago truncatula] AES59156.1
transmembrane protein, putative [Medicago truncatula]
Length = 239
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 18 TRSWFFRILTVGIIALMMELTKVSSLEEQNFTPS--LLCISECSTCPVICGSPP--LSSS 73
T+SWF + + L++ + +E++ PS LLCISEC TCP IC PP L+SS
Sbjct: 11 TKSWFAWTTNIVFMLLVLFANRTLEIEDKVEEPSSGLLCISECVTCPTICSPPPPKLASS 70
Query: 74 PSSPPPPPPPLS--SSPLSLPPPPPPSPSLSLPPIHYPSPLTHQPPPPPTTTKSTPTIP 130
S+ PPP P SSP L P PP P ++ P P LT PPPPP T +P P
Sbjct: 71 NSNHPPPSLPTQNPSSPPLLTPNAPPFPLITPHPPSSPL-LTQNPPPPPLLTSYSPPFP 128