BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g3050.1
(1038 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAL66754.1 putative copia-like retrotransposon Hopscotch polypro... 478 e-145
ABA98049.1 retrotransposon protein, putative, Ty1-copia subclass... 456 e-136
GAU13373.1 hypothetical protein TSUD_175250 [Trifolium subterran... 446 e-134
>AAL66754.1 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 478 bits (1229), Expect = e-145, Method: Compositional matrix adjust.
Identities = 313/918 (34%), Positives = 459/918 (50%), Gaps = 116/918 (12%)
Query: 158 SRGYNSNRGGYQRNYSSVLGPPPSPPLICQYCGKMGHSARQCYSLPQFNEV-AQSFSAMG 216
S G SN+GGY R ++ P +CQ C K GH+A +C+ + + V + +
Sbjct: 230 SGGRQSNQGGYIRRSNNSSDERP----VCQVCFKKGHTAARCWHRFEEDFVPDEKLAGAA 285
Query: 217 LDSVPSDPNWYVDSGASMHISSDVASTSSRYEINHPAHVMVGTGSVAPVSGISNILLPSF 276
+S D NWY D+GA+ HI+ ++ S R + + +GS
Sbjct: 286 TNSYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGS--------------- 330
Query: 277 NFTLNNVLLVPSFKKNLISVSHLLRDFNCLVVFHRSGFYVQDIPTRRILLIGTISNSLFQ 336
D + + FH + F ++D T+ ILL G L+
Sbjct: 331 -------------------------DNSAFIEFHPNFFVIKDKDTKNILLKGRCHKGLYP 365
Query: 337 LSPNKANSDKTPLSLLASPLASSPSATSEVWHRRLAHP--------HLNIFNLVVQNNCL 388
+ S + + L + + S WH RL HP +F + L
Sbjct: 366 IPAT---------STIKNALGAVKPSMSR-WHNRLGHPSSFIVRQYKSEVFQKFHEFQSL 415
Query: 389 SLKKSVMKSFKCNSCIMGKHHRL-PFTSVI-----------HSSTRPNELIHSDLWVETA 436
+ K + G++ RL F + I H E H + VE
Sbjct: 416 VERLFDRKILAVQTDWGGEYQRLNTFFNKIGISHLVSCPHAHQQNGSAERKHRHI-VEVG 474
Query: 437 ITLLHQASVPNSFWPDAFQTAIYTINRLPSSATNGVSPFEKLLNIKPNYNDLRIFGCRCY 496
++LL AS+P FW +AF A Y INR P+ N +PFE+L + +P+Y+ LRIFGC C+
Sbjct: 475 LSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCW 534
Query: 497 PLLSPYRSSKLDLKSKHCIFMGYIPNYKGYKCLDEASSRVYISRHVLFDEALFPFSQTSK 556
P L PY S KL +SK C+F+GY +KG+KCLD ++ RVY+SR V FDE FPF+
Sbjct: 535 PNLRPYNSHKLQFRSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPFASLH- 593
Query: 557 KEEQIPLSNSNVSLIWSVDPIRPTPSNLIRPSNPHPGGPSPILPACPSVVVQHGPRPQRS 616
SN+ L + + P +L+ P+ + G S I A + S
Sbjct: 594 -------SNAGARLRSEIQLLSP---DLLNPATFNSGVDSLIDHAADMSTDPNQISGDNS 643
Query: 617 SQNTS-------------PTTLPPSPIPTRPVSSTNT-TESDHMSPTPTETMSPTNRQMA 662
Q+ + P T P + P S++++ + S + ++A
Sbjct: 644 VQDQAEHTPNMDVLAPSVPNTAPEADAVHIPGSASHSGSAPAAPSTAAPSPTCRGDSRVA 703
Query: 663 QNPSSPNPNFSISDPTTDLPGPSSPISHSNLTPSIPSSSSNPNDSSMVSDVRLQI----- 717
+PS+ + + D + + G + T + P+SS P+ S + Q+
Sbjct: 704 THPSASHDYVASVDMSRGIAGREESFLTAPTTATSPASS-EPSGSLPATAADAQVPEPIL 762
Query: 718 ----SPSSSSTHPMITRTRDGTRKPRVLLTTPTAVSSISTGTSNLYEPSTYIQASKFDHW 773
S +ST P TR + G RKP+V T T T + EP +A +W
Sbjct: 763 GGVSSMDPASTRPR-TRLQQGVRKPKVY-TDGTIRYGCFTSSG---EPYDLNEALGDVNW 817
Query: 774 KIAMSEEMKALLKNNTWTLVPPPSNCNIVGCKWIYKVKQKADGSIQRYKARLVARGYNQE 833
K AM E AL+KN TW LVPP N++GCKW+YK+K+KADGS+ RYKARLVA+GY Q+
Sbjct: 818 KDAMDIEYSALMKNKTWHLVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQ 877
Query: 834 HGVDYDETYSPVVRPATIRSVLSIAISGNWQIQQLDVKNAFLNGDLAELVYMSQPKGFES 893
+G+DYD+T+SPVV+ ATIR +LSIA+S W + QLDV+NAFL+G L E VYM QP G+E
Sbjct: 878 YGIDYDDTFSPVVKHATIRIILSIAVSRGWSLCQLDVQNAFLHGVLEEEVYMQQPPGYED 937
Query: 894 PSHPHHVSKLNKAIYGLKQAPRAWHSRFSTSLLQYGFSRSISDPSMFHFHFSKDIIILLL 953
+ ++V KL+KA+YGLKQAPRAW+SR S LL GF S +D S+F ++ I +L+
Sbjct: 938 STKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLV 997
Query: 954 YVDDIIVTSSSSSLLNKFITWLKNQFEMSDLGPLSYFLGMEANRTSDSMILTQTKYSMEL 1013
YVDDIIV SS+ ++ L +F + DLG L+YFLG+E N+ D +ILTQ KY+ +L
Sbjct: 998 YVDDIIVASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDL 1057
Query: 1014 LDRFGLLNSKPVSTPVLT 1031
L + G+ + KP+STP+ T
Sbjct: 1058 LKKVGMSDCKPISTPLST 1075
>ABA98049.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 456 bits (1173), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/631 (39%), Positives = 355/631 (56%), Gaps = 69/631 (10%)
Query: 433 VETAITLLHQASVPNSFWPDAFQTAIYTINRLPSSATNGVSPFEKLLNIKPNYNDLRIFG 492
VE ++LL AS+P FW +AFQ A Y INR+PS + +SP EKL KP+Y+ LRIFG
Sbjct: 618 VEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLRIFG 677
Query: 493 CRCYPLLSPYRSSKLDLKSKHCIFMGYIPNYKGYKCLDEASSRVYISRHVLFDEALFPFS 552
C C+P L PY + KL +SK C+F+G+ +KG+KCL+ ++ R+YISR V+FDE +FPF+
Sbjct: 678 CACWPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDENIFPFT 737
Query: 553 Q------------------------TSKKEEQI--PLSN---SNVSLIWSVDPIRPTPSN 583
+ S EQ P++N ++VS S P
Sbjct: 738 ELHANAGARLRSEIDILTPELLGPIRSVGNEQCMHPVNNPLSADVSAALSNRANEPHRDG 797
Query: 584 LIRPSNPHPGGPSPILPAC----PSVVVQHGPRPQRSSQNTSPTTLPPSPIPTRPVSS-T 638
+ P++ +P L A P VV H P S ++ PT P +P SS
Sbjct: 798 AVHPADAEDPPATPPLDASSGPEPDRVVHHSPAATSSGRHPGPT---PGSVPRGAASSLA 854
Query: 639 NTTESDHMSPTPTETMSPTNRQMAQNPSSPNPNFSISDPTTDLPGPSSPISHSNLTPSIP 698
T D +S E S ++ Q+ + +++D T L H+++T +
Sbjct: 855 EETAEDSVSQAVQEQESQVVQEQEQSSPAQEHAQAVTDETNTL-------QHADVTDTGS 907
Query: 699 SSSSNPNDSSMVSDVRLQISPSSSSTHPMITRTRDGTRKPRVLLTTPTAVSSISTGTSNL 758
+ + P TR + G RK +V T + + +
Sbjct: 908 EAPAGPR-----------------------TRLQSGVRKEKVY--TDGTIKYKHSWFTAS 942
Query: 759 YEPSTYIQASKFDHWKIAMSEEMKALLKNNTWTLVPPPSNCNIVGCKWIYKVKQKADGSI 818
EP+ ++A K +WK+AM E AL+KN TW LVPP NI+GCKW+YK+K+KADG++
Sbjct: 943 GEPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKADGTL 1002
Query: 819 QRYKARLVARGYNQEHGVDYDETYSPVVRPATIRSVLSIAISGNWQIQQLDVKNAFLNGD 878
RYKARLVA+G+ Q +G+DY++T+SPVV+ ATIR +LS+A+S W ++QLDV+NAFL+G
Sbjct: 1003 DRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFLHGY 1062
Query: 879 LAELVYMSQPKGFESPSHPHHVSKLNKAIYGLKQAPRAWHSRFSTSLLQYGFSRSISDPS 938
L E VYM QP GFE P+ PHHV KL+KA+YGLKQAPRAW SR S L+ GF S D S
Sbjct: 1063 LEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTS 1122
Query: 939 MFHFHFSKDIIILLLYVDDIIVTSSSSSLLNKFITWLKNQFEMSDLGPLSYFLGMEANRT 998
+F + + +L+YVDDIIV SSS + LK +F + DLG L YFLG+E ++
Sbjct: 1123 LFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKV 1182
Query: 999 SDSMILTQTKYSMELLDRFGLLNSKPVSTPV 1029
+ ++L Q KY+ +LL + G+++ KP +TP+
Sbjct: 1183 QNGIVLNQDKYANDLLKKVGMIDCKPANTPL 1213
Score = 126 bits (316), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 19/254 (7%)
Query: 185 ICQYCGKMGHSARQCYSLPQFNEV--AQSFSAMGLDSVPSDPNWYVDSGASMHISSDVAS 242
ICQ C K GH+A C+ + V A+ +A ++S D NWY+D+GA+ H++ ++
Sbjct: 277 ICQVCFKRGHTAADCWYRYDEDYVPDAKHVAAAAVNSYGVDTNWYIDTGATDHVTGELDK 336
Query: 243 TSSRYEINHPAHVMVGTGSVAPVSGISNILLP---SFNFTLNNVLLVPSFKKNLISVSHL 299
+ + + N + +G+ +S I + ++ S N L NVL VP KKNL+SV L
Sbjct: 337 LTMKEKYNGGEQIHTASGAGMDISHIGHAIVHNPNSRNIHLRNVLYVPQAKKNLVSVHRL 396
Query: 300 LRDFNCLVVFHRSGFYVQDIPTRRILLIGTISNSLFQLSPNKANSDKTPLSLLASPLASS 359
+ D + + HR F+++D TR+ LL G S +L P +S K S + L
Sbjct: 397 VNDNSAFLELHRDYFFLKDQITRKTLLKG---RSWRRLYPLPHSSLKQAYSAIKLSL--- 450
Query: 360 PSATSEVWHRRLAHPHLNIFNLVVQNNCLSLKKSVMKSFK-CNSCIMGKHHRLPFTSVIH 418
+ WH RL HP + VV N SL S + S CN+C K H+LPF
Sbjct: 451 -----DRWHHRLGHPSITTVKQVV--NKFSLPCSDLSSESVCNACQQAKSHQLPFPISSS 503
Query: 419 SSTRPNELIHSDLW 432
S P EL+ SD+W
Sbjct: 504 VSKHPLELVFSDVW 517
>GAU13373.1 hypothetical protein TSUD_175250 [Trifolium subterraneum]
Length = 1296
Score = 446 bits (1148), Expect = e-134, Method: Compositional matrix adjust.
Identities = 303/880 (34%), Positives = 442/880 (50%), Gaps = 118/880 (13%)
Query: 184 LICQYCGKMGHSARQCYSL---PQFNEVAQSFSAMGLDSVPSDPNWYVDSGASMHISSDV 240
++CQ+C K+GH+A+ CY + P+ N + + + + NW +D+GAS HIS D+
Sbjct: 255 VVCQFCDKIGHTAKVCYRIKGFPKRNGPKPTANLVQNQAATHHENWIMDTGASHHISQDL 314
Query: 241 ASTSSRYEINHPAHVMVGTGSVAPVSGISNILLPSFN--FTLNNVLLVPSFKKNLISVSH 298
+ V+VG G+ ++ N ++ + L VL VP + NL+SVS
Sbjct: 315 QQLTLANSYPGADRVIVGDGTGLNITHTGNSIIHTSAKPLHLKQVLCVPKIQSNLLSVSK 374
Query: 299 LLRDFNCLVVFHRSGFYVQDIPTRRILLIGTISNSLFQLSPNKANSDKTPLSLLASPLAS 358
L + C V F + F V+D+ + + LL G + L+ LS A S TP L + + S
Sbjct: 375 LCQTNGCSVEFFPNHFVVKDLNSGQALLQGPLKQDLYHLS--TAFSPSTPPQALHTSIHS 432
Query: 359 SPSATSEVWHRRLAHPHLNIFNLVVQNNCLSLKKSVMKSFKCNSCIMGKHHRLPFTSVIH 418
+ + WH +L HP I + ++ L +K + S +C+SC K H+LPF++
Sbjct: 433 TST-----WHHKLGHPSFKIIKHLTDSHHLPIK--LPTSHECSSCHCAKSHKLPFSNHHL 485
Query: 419 SSTRPNELIHSDLW-----------------------VETAITLLHQASVPNSFWPDAFQ 455
+S++P EL++SD+W VET LLH +++P+ W AF
Sbjct: 486 TSSKPLELLYSDVWXHLTTPPHTPEVNGTAERRHRHIVETGRALLHHSNLPSQLWSFAFT 545
Query: 456 TAIYTINRLPSSATNGVSPFEKLLNIKPNYNDLRIFGCRCYPLLSPYRSSKLDLKSKHCI 515
TA+Y INR+P N +SP E L KP+YN L FGC C+P L PY +KL +SK CI
Sbjct: 546 TAVYLINRMPKPIINMISPLEVLFKRKPDYNKLHSFGCLCFPWLKPYMKNKLQPRSKPCI 605
Query: 516 FMGYIPNYKGYKCLDEASSRVYISRHVLFDEALFPFSQTSKKEEQIPLSNSNVSLIWSVD 575
F+GY + Y CL+ S+R+Y+SRHV F E FP+ P S S + S+
Sbjct: 606 FIGYSMSQHAYFCLEPLSNRIYVSRHVNFVENSFPYQSIINSPSTCPPIPSQDSTLHSII 665
Query: 576 PIRPTPSNLIRPSNPHPGGPSPILPACPSVVVQHGPRP-QRSSQNTSPTTLP-----PSP 629
+ NLI S PS L PSVV P P Q S+ +S LP P P
Sbjct: 666 HVN-QDHNLIPESFNSSFVPSQSLGHEPSVV----PEPRQESAPVSSVQPLPILSSTPVP 720
Query: 630 IPTRPVSSTNTTESDHMSPTPTETMSPTNRQMAQNPSSPNPNFSISDPTTDLPGPSSPIS 689
IP++ + TES S P T + M P S + D T S+ +
Sbjct: 721 IPSQLL----VTESSESSMIPISTPTSVPESMLPRPVSAEILVNRDDLTC-----STADT 771
Query: 690 HSNLTPSIPSSSSNPNDSSMVSDVRLQISPSSSSTHPMITRTRDGTRKPRVLLTTPTAVS 749
S+L P+ S+NP + +TR++ KP+ + T +
Sbjct: 772 VSDLVPT----SNNPVQRDRI-----------------VTRSQHNIFKPKKIFT-----A 805
Query: 750 SISTGTSNLYEPSTYIQASKFDHWKIAMSEEMKALLKNNTWTLVPPPSNCNIVGCKWIYK 809
+ NL EPS+ QA K HW+ A S E AL+ N TWTLVP +N N+VGCKW+++
Sbjct: 806 TKHDLQENL-EPSSITQAFKIPHWRDACSAEFDALMNNGTWTLVPRQANTNLVGCKWLFR 864
Query: 810 VKQKADGSIQRYKARLVARGYNQEHGVDYDETYSPVVRPATIRSVLSIAISGNWQIQQLD 869
+K+ DGS+ RYKARLVA+G+ Q G+D+ ET++PVV+P TI+ VL++A++ W + Q+D
Sbjct: 865 IKRNPDGSVARYKARLVAKGFTQTPGLDFKETFAPVVKPQTIKVVLTLALAQGWSLHQMD 924
Query: 870 VKNAFLNGDLAELVYMSQPKGFESPSHPHHVSKLNKAIYGLKQAPRAWHSRFSTSLLQYG 929
G+L E VY+ QP GF P HV KL KAIYGL+QAPRAWH +L G
Sbjct: 925 -------GNLTEDVYIQQPPGFIHSEFPQHVCKLKKAIYGLRQAPRAWHDSLKAFVLSVG 977
Query: 930 FSRSISDPSMFHFHFSKDIIILLLYVDDIIVTSSSSSLLNKFITWLKNQFEMSDLGPLSY 989
FS S+S+ + F L F+T L +F + LG Y
Sbjct: 978 FSTSLSNDTTF---------------------------LQHFMTELSTKFSLKQLGFPHY 1010
Query: 990 FLGMEANRTSDSMILTQTKYSMELLDRFGLLNSKPVSTPV 1029
FLG+E T ++L+Q Y ELL++F + +K V TP+
Sbjct: 1011 FLGIELIPTKAGLLLSQHGYIRELLNKFNMAGTKSVHTPL 1050
Score = 60.1 bits (144), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 32 NIAHLVSIRLDNSNYLLWKSQLLPILHSQDLFKFVDGSFPAPPEFLPSSSPESSSASHTN 91
N + I+LD NY W+ Q + +L DL +VDG+ P P + L +++ + N
Sbjct: 18 NAGSQLCIKLDGDNYPAWRIQFMALLTGYDLIGYVDGTKPCPSKHL------ANNTTAVN 71
Query: 92 PDYLYWYRIDQMLLSWINATLTEPVLSQVLGLTSSKAVWDSL 133
P + +W R DQ++L I +++ V++ + + +S W+ L
Sbjct: 72 PAFTHWVRQDQLILHGIVSSVAATVVTHLGTVKNSNQAWEIL 113