BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000112.1_g0170.1
(545 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAX96781.1 retrotransposon protein, putative, Ty1-copia sub-clas... 279 3e-79
CAD40363.2 OSJNBa0093P23.9 [Oryza sativa Japonica Group] 260 3e-73
CAH66022.1 OSIGBa0105O19.1 [Oryza sativa Indica Group] 258 2e-72
>AAX96781.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] ABA92543.1 retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1170
Score = 279 bits (714), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 234/697 (33%), Positives = 302/697 (43%), Gaps = 232/697 (33%)
Query: 1 MRLWHMSEKGLSLMCGKGLLKDMKKPCMEFCEHCVFGKAHMVSFFTSKHKSK-------- 52
MRL HMSE GL+ + +GLL ++FCEHC+FGK + V F TS H ++
Sbjct: 473 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHNRVKFNTSTHTTEGILDYVHS 532
Query: 53 ---------------------------------EHKNEVFNTFLVWKAMVENKIGQKMKT 79
+HK + F+ F WK MV+ + +K+K
Sbjct: 533 NLWGPARKTSFGGARYMMTTVDDYSRKVWSYFLKHKYQAFDVFKEWKTMVKKQTERKVKI 592
Query: 80 LRSDNGTEYMDGAFKEFCNQEGIVRHWTVVNTPHQNGIVER------------LSHYGRL 127
LR+DNG E FK +C EGIVRH+TV +TP QNG+ ER L + G
Sbjct: 593 LRTDNGMELCSKIFKSYCKCEGIVRHYTVPHTPQQNGVAERMKRTIISKSRCMLPYVGLP 652
Query: 128 KVF------------------------------------------GCTTYYHVKGNKLDN 145
K F GC Y HV KL+
Sbjct: 653 KQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCIAYAHVDNGKLEP 712
Query: 146 TAKKTIFLGYATGVKGYRLWCTEDKKFVINRDVVFDESSIVAMAKAT-VPSCGDVGSTKA 204
A K IFLGY +GVKGY+LWC E KK VI+R+VVF ES ++ +T VP V S +
Sbjct: 713 RAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLYDNPSTNVP----VESQEK 768
Query: 205 QVVEVEAEDQQISRNH-----DQVEHQENTQDEKIDEPDHEKVQGERVGSDK-------P 252
V+VE IS H D +Q+ E D ++ + DK P
Sbjct: 769 ASVQVE---HLISSGHALEKEDVAINQDAPVSEDSDSSIIQQSPKRSIAKDKPKRNTKPP 825
Query: 253 LRHYGQANVVEYALSV--EDDEPVTFKQAITAEERESWLIAMQEEMESLHKNKTWEVVPL 310
R+ +AN+V YALSV E DE + K A E E + Q E VVP
Sbjct: 826 QRYIEEANIVAYALSVVEEIDEQMDVKTAFLHGELEEDIYMEQPEG---------FVVPG 876
Query: 311 PEG------KSVIGCKWVYKKKEDSSEI-----------KGTRSDYDCCVYIKKLCEGDF 353
E KS+ K +Y+ K+ + K RS+YD CVY+ K+ +G
Sbjct: 877 KENLVCRLKKSLRLKKSIYRLKQSPRQCYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGST 935
Query: 354 IYLLLYVDDMLIASRSS---DKLKSQLNQEFEMKDMDAAKKILGMEIKRERSN------- 403
IYLLLYVDDMLIA++ KLK+QL EFEMKD+ AAKKILGMEI RE+S+
Sbjct: 936 IYLLLYVDDMLIAAKHKSEISKLKAQLTSEFEMKDLGAAKKILGMEITREKSDYDIEYMS 995
Query: 404 -------------------TCQVSGYVDSDYAGDLDRRRSTTGYVFRVHGAP-------- 436
+ GYVDSD+AGDL+RRRS T YVF + G
Sbjct: 996 RVPYLSAVGSLMYVMFGRSRDGLVGYVDSDFAGDLNRRRSLTDYVFTIGGCAVSWKTSLQ 1055
Query: 437 ------------------------------------SAIHLAKN----------QVHHAR 450
S I++ N Q+ H R
Sbjct: 1056 AIVALSTTEAEYMAISEACKEAIWLRGLYTELCGVMSCINIFCNSQSAICLTKDQMFHER 1115
Query: 451 TKHIDVRYHFIRYVIEEGDVSLIKSDEADISYKENPG 487
TKHID+RYHFIR VI EG+V + K IS +NP
Sbjct: 1116 TKHIDLRYHFIRGVITEGEVKVCK-----ISTHDNPA 1147
>CAD40363.2 OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 260 bits (664), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 175/501 (34%), Positives = 236/501 (47%), Gaps = 155/501 (30%)
Query: 1 MRLWHMSEKGLSLMCGKGLLKDMKKPCMEFCEHCVFGKAHMVSFFTSKHKSK-------- 52
MRL HMSE GL+ + +GLL ++FCEHC+FGK V F TS H ++
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329
Query: 53 ---------------------------------EHKNEVFNTFLVWKAMVENKIGQKMKT 79
+HK + F+ F WK MVE + +K+K
Sbjct: 330 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389
Query: 80 LRSDNGTEYMDGAFKEFCNQEGIVRHWT-------------------------------- 107
LR+DNG E+ FK +C EGIVRH+T
Sbjct: 390 LRTDNGMEFCSKIFKSYCKSEGIVRHYTPQQNGVAERMNRTIISKARCMLSNAGLPKQFW 449
Query: 108 ---------VVNTPHQNGIVERL---------SHYGRLKVFGCTTYYHVKGNKLDNTAKK 149
++N I ++ ++Y L+VFGCT Y HV KL+ A K
Sbjct: 450 AAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIK 509
Query: 150 TIFLGYATGVKGYRLWCTEDKKFVINRDVVFDESSIVAMAKATVPSCGDVGSTKAQVVEV 209
IFLGY++GVKGY+LWC E KK VI+R+VVF ES ++ D ST V
Sbjct: 510 CIFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLH----------DKPSTNVPVESQ 559
Query: 210 EAEDQQIS-RNHDQVEHQENTQDEKIDEPDHEKVQGERVGSDKPLRHYGQANVVEYALSV 268
E Q R+ + + + NT+ P R+ +AN+V YALSV
Sbjct: 560 EKASVQFPKRSIAKDKPKRNTK--------------------PPQRYIEEANIVAYALSV 599
Query: 269 EDD-----EPVTFKQAITAEERESWLIAMQEEMESLHKNKTWEVVPLPEGKSVIGCKWVY 323
++ EP T+ +AI +++ W+ M +EMESL KN TWE+V LP+ K I CKW++
Sbjct: 600 TEEIEGNAEPSTYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWIF 659
Query: 324 KKKEDSSEIKGTRSDYDCCVYIKKLCEGDFIYLLLYVDDMLIASRSS---DKLKSQLNQE 380
K+KE IYLLLYVDDMLIA++ +KLK+QL+ E
Sbjct: 660 KRKEA-------------------------IYLLLYVDDMLIAAKDKSEIEKLKAQLSSE 694
Query: 381 FEMKDMDAAKKILGMEIKRER 401
FEMKD+ AAKKIL MEI RER
Sbjct: 695 FEMKDLGAAKKILSMEITRER 715
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 437 SAIHLAKNQVHHARTKHIDVRYHFIRYVIEEGDVSLIK----SDEADISYKENPGVRPKF 492
SAI+L ++Q+ H RTKHIDVRYHFIR VI EGDV + K + AD+ K P KF
Sbjct: 876 SAIYLTEDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMIKAVPAT--KF 933
Query: 493 EV 494
E+
Sbjct: 934 EL 935
>CAH66022.1 OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 258 bits (658), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 174/501 (34%), Positives = 235/501 (46%), Gaps = 155/501 (30%)
Query: 1 MRLWHMSEKGLSLMCGKGLLKDMKKPCMEFCEHCVFGKAHMVSFFTSKHKSK-------- 52
MRL HMSE GL+ + +GLL ++FCEHC+FGK V F TS H ++
Sbjct: 270 MRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHS 329
Query: 53 ---------------------------------EHKNEVFNTFLVWKAMVENKIGQKMKT 79
+HK + F+ F WK MVE + +K+K
Sbjct: 330 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389
Query: 80 LRSDNGTEYMDGAFKEFCNQEGIVRHWT-------------------------------- 107
LR+DNG E+ FK +C EGIVRH+T
Sbjct: 390 LRTDNGMEFCSKIFKSYCKSEGIVRHYTPQQNGVAERMNRTIISKARCMLSNAGLPKQFW 449
Query: 108 ---------VVNTPHQNGIVERL---------SHYGRLKVFGCTTYYHVKGNKLDNTAKK 149
++N I ++ ++Y L+VFGCT Y HV KL+ A K
Sbjct: 450 AAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIK 509
Query: 150 TIFLGYATGVKGYRLWCTEDKKFVINRDVVFDESSIVAMAKATVPSCGDVGSTKAQVVEV 209
IFLGY++GVKGY+LWC E KK VI+R+VVF ES ++ D ST V
Sbjct: 510 CIFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLH----------DKPSTNVPVESQ 559
Query: 210 EAEDQQIS-RNHDQVEHQENTQDEKIDEPDHEKVQGERVGSDKPLRHYGQANVVEYALSV 268
E Q R+ + + + NT+ P R+ +AN+V YALSV
Sbjct: 560 EKASVQFPKRSIAKDKPKRNTK--------------------PPQRYIEEANIVAYALSV 599
Query: 269 EDD-----EPVTFKQAITAEERESWLIAMQEEMESLHKNKTWEVVPLPEGKSVIGCKWVY 323
++ EP + +AI +++ W+ M +EMESL KN TWE+V LP+ K I CKW++
Sbjct: 600 TEEIEGNAEPSIYSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKPIRCKWIF 659
Query: 324 KKKEDSSEIKGTRSDYDCCVYIKKLCEGDFIYLLLYVDDMLIASRSS---DKLKSQLNQE 380
K+KE IYLLLYVDDMLIA++ +KLK+QL+ E
Sbjct: 660 KRKEA-------------------------IYLLLYVDDMLIAAKDKSEIEKLKAQLSSE 694
Query: 381 FEMKDMDAAKKILGMEIKRER 401
FEMKD+ AAKKIL MEI RER
Sbjct: 695 FEMKDLGAAKKILSMEITRER 715
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 6/62 (9%)
Query: 437 SAIHLAKNQVHHARTKHIDVRYHFIRYVIEEGDVSLIK----SDEADISYKENPGVRPKF 492
SAI+L ++Q+ H RTKHIDVRYHFIR VI EGDV + K + AD+ K P KF
Sbjct: 876 SAIYLTEDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMIKAVPAT--KF 933
Query: 493 EV 494
E+
Sbjct: 934 EL 935
Database: ./nr
Posted date: Sep 13, 2016 10:08 PM
Number of letters in database: 35,143,497,570
Number of sequences in database: 95,329,361
Lambda K H
0.320 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 95329361
Number of Hits to DB: 22,958,191,752,071
Number of extensions: 192235251
Number of successful extensions: -920348728
Number of sequences better than 1.0e-04: 6201031
Number of HSP's gapped: -971027327
Number of HSP's successfully gapped: 12907630
Length of database: 35,143,497,570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 126 (53.1 bits)