BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000112.1_g0440.1
(200 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 185 7e-51
WP_042516817.1 hypothetical protein [Lactobacillus brevis] KIO93... 170 3e-49
AAO37490.1 putative gag-pol polyprotein [Oryza sativa Japonica G... 176 7e-49
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 185 bits (469), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 103/130 (79%)
Query: 71 DDILLIGNNIPMFESVKDRLRKCFSMKDLRDAEYILGIKIYRDKSKKMIRLSQETYIDKI 130
DDILL+GN+IPM ESVK LRK FSMKDL DA YILGI+IYRD+SK++I LSQE YIDK+
Sbjct: 573 DDILLVGNDIPMLESVKSSLRKSFSMKDLGDAAYILGIRIYRDRSKRLIGLSQEMYIDKV 632
Query: 131 LCRFKMKDSRRGFLPMTQDTVLSTNQSPKDPDEQAHMNKVSYASAIGFIMYVMICTRPDV 190
L RF M++S+RGFLPM LS NQ P DE+ M+ + YASAIG IMY MICTRPDV
Sbjct: 633 LNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSDIPYASAIGSIMYAMICTRPDV 692
Query: 191 SYALSMCSRY 200
SYALS+ SRY
Sbjct: 693 SYALSVTSRY 702
>WP_042516817.1 hypothetical protein [Lactobacillus brevis] KIO93795.1 hypothetical
protein QP38_2416 [Lactobacillus brevis]
Length = 283
Score = 170 bits (430), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 98/129 (75%)
Query: 71 DDILLIGNNIPMFESVKDRLRKCFSMKDLRDAEYILGIKIYRDKSKKMIRLSQETYIDKI 130
DDILLIGNN+ ES+KD L K FSMKDL +A YILGIKIYRD+SK++I LSQ TY+D +
Sbjct: 57 DDILLIGNNVEFLESIKDYLNKSFSMKDLGEAAYILGIKIYRDRSKRVIGLSQSTYLDNV 116
Query: 131 LCRFKMKDSRRGFLPMTQDTVLSTNQSPKDPDEQAHMNKVSYASAIGFIMYVMICTRPDV 190
L RFKM+ S++GFLP+ Q T LS Q P +++ HM V YASAIG IMY M+CTRPDV
Sbjct: 117 LKRFKMEQSKKGFLPVLQGTKLSKTQCPATDEDREHMRSVPYASAIGSIMYAMMCTRPDV 176
Query: 191 SYALSMCSR 199
S A+SM R
Sbjct: 177 SLAISMAGR 185
>AAO37490.1 putative gag-pol polyprotein [Oryza sativa Japonica Group]
AAS01915.1 putative polyprotein [Oryza sativa Japonica
Group]
Length = 547
Score = 176 bits (445), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 101/130 (77%)
Query: 71 DDILLIGNNIPMFESVKDRLRKCFSMKDLRDAEYILGIKIYRDKSKKMIRLSQETYIDKI 130
DDILLIGN IPM ES+K L+ FSMKDL +A YILGI+IYRD+SK++I LSQ TYIDK+
Sbjct: 283 DDILLIGNVIPMLESIKTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKV 342
Query: 131 LCRFKMKDSRRGFLPMTQDTVLSTNQSPKDPDEQAHMNKVSYASAIGFIMYVMICTRPDV 190
L RF M+DS++GFLPM+ L NQ P+ DE+ M+ + YASAIG IMY M+CTRPDV
Sbjct: 343 LKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERNKMSVILYASAIGSIMYAMLCTRPDV 402
Query: 191 SYALSMCSRY 200
SYALS SRY
Sbjct: 403 SYALSATSRY 412
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 49/61 (80%)
Query: 5 DSEKWLGAMKSEKESMSENQVWNLVDLPDGVTPIGCKWVFKMKTDRDGNVSVFKARLVAK 64
DSEKWLGAMKSE ESM NQVWNLV+ PDGV I CKWVFK KTD DGN ++KARLVAK
Sbjct: 140 DSEKWLGAMKSEIESMHVNQVWNLVNPPDGVKAIECKWVFKKKTDVDGNFHIYKARLVAK 199
Query: 65 G 65
Sbjct: 200 A 200