BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0230.1
(384 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP47640.1 Retrovirus-related Pol polyprotein from transposon TN... 526 e-176
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 493 e-170
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 513 e-168
>KYP47640.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 526 bits (1354), Expect = e-176, Method: Compositional matrix adjust.
Identities = 258/387 (66%), Positives = 305/387 (78%), Gaps = 3/387 (0%)
Query: 1 LPEGKFVIGCKWVYKKKEDSSEIKGTRYKARLVVKGYAQKEGGDYNEIFSPLVKHNSIRV 60
LP+GK IGCKWVY KK+ S+ RYKARLV KGYAQKEG DYNE+FSP+VKH+SIRV
Sbjct: 616 LPKGKKAIGCKWVYAKKDGFSDKSEVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRV 675
Query: 61 LLSIVAHSDLELEQLNVKTAFLHGDLEEEIYMAQPEGYKVEGKENQVCRLRKSLYGLKQS 120
LL++VA D+EL Q++VKTAFLHGDLEEEIYM QPEG+KV GKEN C+L KSLYGLKQS
Sbjct: 676 LLALVAQLDMELVQMDVKTAFLHGDLEEEIYMTQPEGFKVAGKENMFCKLEKSLYGLKQS 735
Query: 121 PRQWYKRFDFFMLKHDFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMVEIDKLK 180
PRQWYKRFD FML+ + RS YD CVY++KL +G FIYLLLYVDDMLIAS++ EI+KLK
Sbjct: 736 PRQWYKRFDKFMLRQKYTRSKYDHCVYLRKLHDGSFIYLLLYVDDMLIASKNKEEIEKLK 795
Query: 181 SQLSQEFEMKDMGAAKTILGMEIKRERSSKKLYLNQKGYIERVVSRFRMQN-AKAVSTPL 239
+QL+ EFEMKD+G AK ILGMEI R+R +L L QK Y++RV+ RF + + +K VSTPL
Sbjct: 796 TQLNGEFEMKDLGEAKKILGMEISRDRKLGRLCLTQKEYLKRVLKRFGISDESKPVSTPL 855
Query: 240 APHFRLSGKQSPTITVEKDHMDRVPYASAVGSLMYGMVCTRPDISQVVSVVSRFMANPGK 299
A HF+LS SP EK +M +VPYASAVGSLMY MVCTRPDIS V VVSR+M NPGK
Sbjct: 856 ASHFKLSANLSPRDAAEKAYMSKVPYASAVGSLMYAMVCTRPDISYAVGVVSRYMHNPGK 915
Query: 300 THREAVKWVLRYLMGTVDTGLCFG--GDTCQVSGFVDSDYADDLDRKRSTTGYIFRVHGA 357
H +AVKW+LRY++ TVD GL F D V G+ DS+YA DLD +RSTTGY+F + A
Sbjct: 916 EHWQAVKWILRYILNTVDVGLVFQQEQDGQNVVGYCDSNYAGDLDNRRSTTGYVFTLAKA 975
Query: 358 RVSWRSMLQSTVALSTTEAEYMAMAES 384
V WRS LQSTVALSTTEAEYMA+ E+
Sbjct: 976 PVCWRSTLQSTVALSTTEAEYMALTEA 1002
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 493 bits (1268), Expect = e-170, Method: Compositional matrix adjust.
Identities = 238/386 (61%), Positives = 292/386 (75%), Gaps = 3/386 (0%)
Query: 1 LPEGKFVIGCKWVYKKKEDSSEIKGTRYKARLVVKGYAQKEGGDYNEIFSPLVKHNSIRV 60
LP+GK + CKW+YKKK+ ++ R KARLVVKG+ QKEG D+NEIFSP+V+H SIR+
Sbjct: 19 LPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEGIDFNEIFSPVVRHTSIRI 78
Query: 61 LLSIVAHSDLELEQLNVKTAFLHGDLEEEIYMAQPEGYKVEGKENQVCRLRKSLYGLKQS 120
LL+ VA DLELEQL+VKTAFLHG+LEEEIYM QPEG+ V KE+ VC+L+KSLYGLKQ+
Sbjct: 79 LLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQA 138
Query: 121 PRQWYKRFDFFMLKHDFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMVEIDKLK 180
PRQWYK+FD FM+ + RS YD C+Y ++ +G FIYLLLYVDDMLIASR I KLK
Sbjct: 139 PRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLK 198
Query: 181 SQLSQEFEMKDMGAAKTILGMEIKRERSSKKLYLNQKGYIERVVSRFRMQNAKAVSTPLA 240
+QL+ EFEMK++GAAK ILGMEI R+R KL+L+Q+ YIER++ RF M N K VSTPLA
Sbjct: 199 AQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLA 258
Query: 241 PHFRLSGKQSPTITVEKDHMDRVPYASAVGSLMYGMVCTRPDISQVVSVVSRFMANPGKT 300
HF+LS P E + M VPYASAVGSLMY MVCTRPD++ VS+VSR+M NPGK
Sbjct: 259 AHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKD 318
Query: 301 HREAVKWVLRYLMGTVDTGLCFG---GDTCQVSGFVDSDYADDLDRKRSTTGYIFRVHGA 357
H AVKW+ RYL GT + GL F T V+GFVDSDY DLDR+RS +GYIF + +
Sbjct: 319 HWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCNS 378
Query: 358 RVSWRSMLQSTVALSTTEAEYMAMAE 383
+SW++ LQS ALSTTEAEY++ E
Sbjct: 379 AISWKASLQSIAALSTTEAEYVSATE 404
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 513 bits (1320), Expect = e-168, Method: Compositional matrix adjust.
Identities = 239/384 (62%), Positives = 304/384 (79%), Gaps = 1/384 (0%)
Query: 2 PEGKFVIGCKWVYKKKEDSSEIKGTRYKARLVVKGYAQKEGGDYNEIFSPLVKHNSIRVL 61
P G+ +I CKWV+KKKE S +G +YKAR+V +G+ Q+EG DYNEIFSP+V+H SIRVL
Sbjct: 829 PSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVL 888
Query: 62 LSIVAHSDLELEQLNVKTAFLHGDLEEEIYMAQPEGYKVEGKENQVCRLRKSLYGLKQSP 121
L+IVAH +LELEQL+VKTAFLHG+LEEEIYM QP+G++V GKEN VC+L+KSLYGLKQSP
Sbjct: 889 LAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSP 948
Query: 122 RQWYKRFDFFMLKHDFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMVEIDKLKS 181
RQWYKRFD +M+K + RS YDCCVY +L + FIYL+LYVDDMLIA++ +I KLK
Sbjct: 949 RQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKG 1008
Query: 182 QLSQEFEMKDMGAAKTILGMEIKRERSSKKLYLNQKGYIERVVSRFRMQNAKAVSTPLAP 241
LS EFEMKD+GAA+ ILGMEI R+R +KL+L+Q+ YI++V++RF M ++K + TP A
Sbjct: 1009 LLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAA 1068
Query: 242 HFRLSGKQSPTITVEKDHMDRVPYASAVGSLMYGMVCTRPDISQVVSVVSRFMANPGKTH 301
+ L+ +P EK++M RVPYASAVGSLMY MVCTRPD++ VSVVSRFM PG+ H
Sbjct: 1069 NIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREH 1128
Query: 302 REAVKWVLRYLMGTVDTGLCFGGDT-CQVSGFVDSDYADDLDRKRSTTGYIFRVHGARVS 360
+AVK + RYL GT D GL +GGDT C V+G+ DSDYA D+D +RS TGY+F + G+ VS
Sbjct: 1129 WQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVS 1188
Query: 361 WRSMLQSTVALSTTEAEYMAMAES 384
W++ LQ TV LSTTEAEYMA+ E+
Sbjct: 1189 WKATLQPTVTLSTTEAEYMALTEA 1212