BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0240.1
(668 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN... 446 e-144
JAT57914.1 Retrovirus-related Pol polyprotein from transposon TN... 407 e-132
KYP59893.1 Retrovirus-related Pol polyprotein from transposon TN... 389 e-124
>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 446 bits (1146), Expect = e-144, Method: Compositional matrix adjust.
Identities = 236/510 (46%), Positives = 342/510 (67%), Gaps = 18/510 (3%)
Query: 1 MQMKNLLISQKLYKTLMGK--KPRDMSDEDWEELDLEARTTIMLCLKRDVAFLVDGETTA 58
+QMK +L L K L GK KP +M+DE W+ELD +A + I LCL ++V V ETTA
Sbjct: 23 VQMKAVLTQNGLKKALDGKAKKPVNMTDEQWDELDEKALSAIQLCLSKEVLREVANETTA 82
Query: 59 ASVWLKLESNFMTKTLTNRVYLKSKLFTCRMEEGSSIQDYVNRFDRIISDLKDIDVKV-- 116
A++WLKLES +MTK+L N++ LK +L+T RM EG+ IQ ++N F+ II DL++I++K+
Sbjct: 83 AALWLKLESLYMTKSLANKLRLKERLYTIRMVEGTPIQSHLNEFNSIIMDLENIEIKIDD 142
Query: 117 EDQALILLLSLPKSYENLVQTLMLIG-DSLSMEETRNSLLADDLRKVATSGMTSGGVDKD 175
ED+A++L++SLP +Y++ + ++ D+LS E+ +++LL+ + + +D
Sbjct: 143 EDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNLLSKEKFDLDIHS-------ED 195
Query: 176 QAQRLFATRGRSNERGNGKGGKSRSKSRG-SFKKTCFSCGELDHFKAACPKRKLKQKNEG 234
+ + L + RGR+ E+G+ KSRSKSRG KTC C + H + C LK+K E
Sbjct: 196 KGEGL-SVRGRTQEKGSTSNKKSRSKSRGRKSNKTCRYCKKFGHDISDC--FILKKKQER 252
Query: 235 YKEKQEMQEAGYVSEDPDECFSVTEMSDEISD-KWMLDSEASHYMCPNRKWFTTYRSIDG 293
++ + EA V D D ++ SD+ S +W+LDS + +MCP + FTT +D
Sbjct: 253 QEKGKNPAEAANVETDSDGDVMISVSSDKRSKTEWILDSGCTFHMCPYKDLFTTLEPVDS 312
Query: 294 GTVIMGNDNICKIVGLGTIRIKMHDGVVRTLTDVRHIPELRKNLISLGVLERNGCKIIIE 353
G V+MGND CKI G+GTI+IK HDG ++TL++VR IP+L++NLISLG LE GCK E
Sbjct: 313 GVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAE 372
Query: 354 NGSIKVVKGSLVVMRGTRYGTLYKLLGTTVTGDVAVGISGRDPTASTRLWHMRLGHMSEK 413
G +KV KG++V+++ R G+LY L G+ VTG AV S D A T+LWHMRLGHMSEK
Sbjct: 373 GGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDA-TKLWHMRLGHMSEK 431
Query: 414 GLYSMCRKGLLKDMKKPCMGFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWGPAKLA 473
G++ + ++GLL + + FCEHCVFGK RV+FST+ HR+K LDY+H+D+WGP+K+
Sbjct: 432 GMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVP 491
Query: 474 SKGGSRYFVTFVDDHSRFVWLYFLKHKNES 503
S GG RY +T +DD SR VW+YFL+HKNE+
Sbjct: 492 SYGGCRYMMTIIDDFSRKVWVYFLRHKNET 521
>JAT57914.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 529
Score = 407 bits (1047), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/507 (45%), Positives = 339/507 (66%), Gaps = 13/507 (2%)
Query: 1 MQMKNLLISQKLYKTLMG--KKPRDMSDEDWEELDLEARTTIMLCLKRDVAFLVDGETTA 58
++M+ +L Q L K L+G K +S E+ +++D A I LCL +V V E +A
Sbjct: 21 VKMRAILTQQGLQKALLGIEKMSSTLSQEEKQDMDERALAVIQLCLSNEVLREVIHEKSA 80
Query: 59 ASVWLKLESNFMTKTLTNRVYLKSKLFTCRMEEGSSIQDYVNRFDRIISDLKDIDVKVED 118
A++WLKLES +MTK+LT++++LK +LF +M EG+S++ +++ F+ I+ DL++++VK+ED
Sbjct: 81 AALWLKLESLYMTKSLTSKLHLKQRLFMLKMVEGTSVKTHLDEFNSILMDLENLEVKIED 140
Query: 119 --QALILLLSLPKSYENLVQTLMLIGDSLSMEETRNSLLADDLRKVATSGMTSGGVDKDQ 176
QAL+LL SLP S+++ +TL+ DS+S+E+ ++SL + +L +G +S GV +
Sbjct: 141 EDQALLLLCSLPPSFKHFRETLLYGRDSISVEDVKSSLFSKELMDRDLTGCSSEGVSEG- 199
Query: 177 AQRLFATRGRSNERG-NGKGGKSRSKSRGSFKKTCFSCGELDHFKAACPKRKLKQKNEGY 235
RGRS ER K G+ RSKSR FK C C H K+ C K KQK E
Sbjct: 200 ----LVARGRSQERSFEKKKGERRSKSRNKFK-ICNYCKMKGHIKSECYGLKNKQKKE-E 253
Query: 236 KEKQEMQEAGYVSEDPDECFSVTEMSDEISDKWMLDSEASHYMCPNRKWFTTYRSIDGGT 295
K ++ E G V++D E + ++ + +D+W+LDS S++MCP + F TY DGG
Sbjct: 254 KNPEKAAEVG-VAKDECEDYVLSVNAVRSNDEWILDSGYSYHMCPYKDRFHTYEHDDGGV 312
Query: 296 VIMGNDNICKIVGLGTIRIKMHDGVVRTLTDVRHIPELRKNLISLGVLERNGCKIIIENG 355
V+MGN+ K +G+G+IRIKM+DG+VRTLT VRH+ +L+KNLISLG LE NGCK E G
Sbjct: 313 VLMGNNAPRKTIGIGSIRIKMYDGIVRTLTQVRHVLDLKKNLISLGTLEANGCKYSAEGG 372
Query: 356 SIKVVKGSLVVMRGTRYGTLYKLLGTTVTGDVAVGISGRDPTASTRLWHMRLGHMSEKGL 415
++V +G+L++M+ R +LY L+GTTVTG A + T+LWHMRLGHMSEKG+
Sbjct: 373 VLRVSRGALILMKVKRTNSLYTLIGTTVTGAAAAVSPSMSESEVTKLWHMRLGHMSEKGM 432
Query: 416 YSMCRKGLLKDMKKPCMGFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWGPAKLASK 475
+ ++GLL + FCEHC+FGK +V+F T+ HR+K LDY+H+D+WGPA++ SK
Sbjct: 433 TMLSKRGLLCGQSTGKVEFCEHCIFGKQRKVSFQTTIHRTKATLDYIHSDLWGPARVPSK 492
Query: 476 GGSRYFVTFVDDHSRFVWLYFLKHKNE 502
GG+RYF+TF+DD+SR VW++ LKHK+E
Sbjct: 493 GGARYFLTFIDDYSRKVWVFMLKHKDE 519
>KYP59893.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 389 bits (999), Expect = e-124, Method: Compositional matrix adjust.
Identities = 204/521 (39%), Positives = 321/521 (61%), Gaps = 40/521 (7%)
Query: 3 MKNLLISQKLYKTLMG------------KKPRDMSDEDWEELDLEARTTIMLCLKRDVAF 50
M+ LL Q+++ L+ +KP + +ED E + +A + I+L L +V +
Sbjct: 1 MRALLKEQRVWGPLVSVSAKKENIAKSEEKPTSVKNEDLAEQEEKAHSLILLSLSDEVLY 60
Query: 51 LVDGETTAASVWLKLESNFMTKTLTNRVYLKSKLFTCRMEEGSSIQDYVNRFDRIISDLK 110
V + TA+ +WLKLE +MTK++ N++ LK +LF M+E + +QD+++ + I+ +L+
Sbjct: 61 EVADQETASGLWLKLEKLYMTKSICNKLLLKRRLFGLHMKEDTPLQDHLDELNSILMELR 120
Query: 111 DIDVKVEDQ--ALILLLSLPKSYENLVQTLMLIGDSLSMEETRNSLLADDLRKVATSGMT 168
DI+VK+ED+ A+ILL SLP SYE+ V +L + + ++MEE ++SL + +LR A++
Sbjct: 121 DINVKIEDEDAAMILLASLPPSYESFVNSLSVGKECITMEEVKSSLHSRELRFKASAN-- 178
Query: 169 SGGVDKDQAQRLFATRGRSNERGNGKGGKSRSKSRGSFKKTCFSCGELDHFKAACPKRKL 228
S GV+ L A +N G K + + K++ + + C C E H+K CPK++
Sbjct: 179 SEGVN---GAGLLAFNSTTN--GKKKKEQGKKKTKVNPRDICNYCKEPGHWKKDCPKKR- 232
Query: 229 KQKNEGYKEKQEMQEAGYVSEDPDECF------SVTEMSDEISDKWMLDSEASHYMCPNR 282
Q++ V+ D F S+ + ++W+LDS S++MCPNR
Sbjct: 233 ------------NQKSVVVAAQEDSSFENELVLSIVDNHQHFVEQWVLDSGCSYHMCPNR 280
Query: 283 KWFTTYRSIDGGTVIMGNDNICKIVGLGTIRIKMHDGVVRTLTDVRHIPELRKNLISLGV 342
WF TY GG V MGND CK + +GTI+IKMHDGV+RTLT+VRH+P+L+KNLIS+GV
Sbjct: 281 SWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGV 340
Query: 343 LERNGCKIIIENGSIKVVKGSLVVMRGTRYGTLYKLLGTTVTGDVAVGISGRDPTASTRL 402
L+ G K +E G +++ KGS +V+RG + G LY L G+T ++ ++ + TRL
Sbjct: 341 LDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGSTNLISESISVADKHTLDLTRL 400
Query: 403 WHMRLGHMSEKGLYSMCRKGLLKDMKKPCMGFCEHCVFGKAHRVTFSTSKHRSKEVLDYV 462
WHMRLGHMSE+G+ + ++ LL+D + FCEHCV GK HR F ++H +K LDYV
Sbjct: 401 WHMRLGHMSERGMMVLSKQKLLRDHTVKELKFCEHCVLGKHHRSKFPKAQHTTKSTLDYV 460
Query: 463 HTDVWGPAKLASKGGSRYFVTFVDDHSRFVWLYFLKHKNES 503
H++ WGP+++ S GG RYF++ +DD+SR W++ +KHKN++
Sbjct: 461 HSNCWGPSRVPSLGGGRYFLSIIDDYSRMTWIFIMKHKNQA 501