BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0250.1
(597 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CAC95126.1 gag-pol polyprotein [Populus deltoides] 670 0.0
CAN69462.1 hypothetical protein VITISV_002919 [Vitis vinifera] 327 3e-97
AGJ83729.1 gag-pol polyprotein, partial [Caragana korshinskii] 306 3e-91
>CAC95126.1 gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/609 (59%), Positives = 439/609 (72%), Gaps = 56/609 (9%)
Query: 1 MFQQSNFATQYKLEVDIRNMKQRDMSIQEFHAAMTDLWDQLALTESEELQACPSYIAHRE 60
+F QSNFA QY+LE DIR + Q++MSIQEF++AMTDLWDQLALTES EL+AC +YI RE
Sbjct: 101 LFTQSNFAKQYQLENDIRALHQKNMSIQEFYSAMTDLWDQLALTESVELKACGAYIERRE 160
Query: 61 EGRLVQFFMALRSDFEAIRTTILHSKPLPSIAKVVNELMDEETRLKYQARKGILETPIET 120
+ RLVQF ALRSDFE +R +ILH PLPS+ VV+EL+ EE RL+ + KGIL +
Sbjct: 161 QQRLVQFLTALRSDFEGLRGSILHRSPLPSVDSVVSELLAEEIRLQSYSEKGILSASNPS 220
Query: 121 VLAVQLKP--NHQNKPYTKVAMDECSFCKQKGHWKAQCPKLINKSQ--------QNQRPQ 170
VLAV KP NHQNKPYT+V DECSFCKQKGHWKAQCPKL ++Q Q+ +
Sbjct: 221 VLAVPSKPFSNHQNKPYTRVGFDECSFCKQKGHWKAQCPKLRQQNQAWKSGSQSQSNAHR 280
Query: 171 KPFKYNTATVIPPSDSSGSSGSSSSMPKTDNVVDQFQMFQKFLAMQPHVMSTSAPQGPLA 230
P Y PP ++ + S S+ + + +Q FQKFL++QP MS S+
Sbjct: 281 SPQGYK-----PPHHNTAAVASPGSITDPNTLAEQ---FQKFLSLQPQAMSASS------ 326
Query: 231 PKSSSTTLDSLSDQFQRFLAMQPHALSSSEGLFSLISSPSMPYSVWVLDSGASRHMSPDL 290
+ PH SS + +S WVLDSGAS HMSPD
Sbjct: 327 ------------------IGQLPH------------SSSGISHSEWVLDSGASHHMSPDS 356
Query: 291 SSFVSLKYISDLPVQTADGTPMSLGGIGSVVTPNLSLQNVLYVPKLTLNLAFISQLCDS- 349
SSF S+ +S +PV TADGTPM L G+GSVVT +LSL NV +PKL LNLA I Q+CDS
Sbjct: 357 SSFTSVSPLSSIPVMTADGTPMPLAGVGSVVTLHLSLPNVYLIPKLKLNLASIGQICDSG 416
Query: 350 RCLILFSSTGCYVKDVQSQKLIGTGRRHEALYFVEEL-IVPDVAASTFDLSSFRLSPSSS 408
L++FS + C V+D+QSQKLIGTGRR LY ++EL + VAA+T DLS FRLS SSS
Sbjct: 417 DYLVMFSGSFCCVQDLQSQKLIGTGRRENGLYILDELKVPVVVAATTVDLSFFRLSLSSS 476
Query: 409 SFYLWHSRLGHVSASRLKYLVSTGALGDLQVNNISDCSGCKLAIFSALPFAQSLSVSIKP 468
SFYLWHSRLGHVS+SRL++L STGALG+L+ +ISDCSGCKLA FSALPF +S SVS P
Sbjct: 477 SFYLWHSRLGHVSSSRLRFLASTGALGNLKTCDISDCSGCKLAKFSALPFNRSTSVSSSP 536
Query: 469 FDLVHSDVWGHFPVPTKGGSQYYDSFIDDCTRFCWVYLVKHRSDFYDIYQQFRALVKTQY 528
FDL+HSDVWG PV TKGGS+YY SFIDD TR+CWVYL+KHRS+F++IY FRAL+KTQ+
Sbjct: 537 FDLIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAFRALIKTQH 596
Query: 529 SSIIKCFRCDLGEEYTSNRFRELLAMDGTVHQSSCTDTLEQNGVAERKHRHIFETARSLL 588
S++IKCFRCDLG EYTSN+F ++LA+DGT+HQ+SCTDT EQNGVAERKHRHI ETARSLL
Sbjct: 597 SAVIKCFRCDLGGEYTSNKFCQMLALDGTIHQTSCTDTPEQNGVAERKHRHIVETARSLL 656
Query: 589 LSAFVPSEY 597
LSAFV SE+
Sbjct: 657 LSAFVLSEF 665
>CAN69462.1 hypothetical protein VITISV_002919 [Vitis vinifera]
Length = 993
Score = 327 bits (839), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 209/374 (55%), Positives = 247/374 (66%), Gaps = 21/374 (5%)
Query: 229 LAPKSSSTTLDSLSDQFQRFLAMQPHALSSSEGL-FSLISSPSMPYSVWVLDSGASRHMS 287
+ +SS S+ F ++ + SS GL F ISS S S+WVLDS S HMS
Sbjct: 208 IVATTSSYVSKSIDTIFHVEISSYAMSTPSSSGLPFPNISSKSS--SLWVLDSXTSHHMS 265
Query: 288 PDLSSFVSLKYI-SDLPVQTADGTPMSLGGIGSVVTPNLSLQNVLYVPKLTLNLAFISQL 346
SSFVS+ + S V T D TPM L G+GS+ T LSL NV +PKLT+NL F+SQL
Sbjct: 266 LSSSSFVSMCHSPSSXSVITXDSTPMPLAGVGSICTXYLSLFNVYCIPKLTMNLIFVSQL 325
Query: 347 CDSRCLILFSSTGCYVKDVQSQKLIGTGRRHEALYFVEELIVPDV---AASTFDLSSFRL 403
DS SQ LIG GRR E LY ++EL +P V AA + DLSSF L
Sbjct: 326 YDSY--------------PXSQXLIGXGRRQEGLYVMDELRLPRVSNLAALSVDLSSFHL 371
Query: 404 SPSSSSFYLWHSRLGHVSASRLKYLVSTGALGDLQVNNISDCSGCKLAIFSALPFAQSLS 463
+ SSS FY WHSRLGH+SA LKYL+S G LG+ Q ++IS CSGCKLA FSAL F QS+S
Sbjct: 372 TSSSSXFYSWHSRLGHISAPHLKYLISKGFLGNFQTHDISYCSGCKLAKFSALLFNQSVS 431
Query: 464 VSIKPFDLVHSDVWGHFPVPTKGGSQYYDSFIDDCTRFCWVYLVKHRSDFYDIYQQFRAL 523
+ PFDL+HS+VWG V TKG S+YY SFIDD TR+CWVYL+KHR DF +Y F +
Sbjct: 432 PFVAPFDLIHSNVWGPSXVATKGWSKYYVSFIDDHTRYCWVYLMKHRFDFIHVYTTFCSF 491
Query: 524 VKTQYSSIIKCFRCDLGEEYTSNRFRELLAMDGTVHQSSCTDTLEQNGVAERKHRHIFET 583
VKTQ+S+IIKCFRCDLG YT F ELL DGTVHQSSCTDT +QN V +RKHRHI T
Sbjct: 492 VKTQHSAIIKCFRCDLGGGYTFITFSELLIFDGTVHQSSCTDTPQQNEVTKRKHRHIVGT 551
Query: 584 ARSLLLSAFVPSEY 597
ARSLLLSA VPS +
Sbjct: 552 ARSLLLSAGVPSAF 565
>AGJ83729.1 gag-pol polyprotein, partial [Caragana korshinskii]
Length = 732
Score = 306 bits (783), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 142/181 (78%), Positives = 161/181 (88%)
Query: 417 LGHVSASRLKYLVSTGALGDLQVNNISDCSGCKLAIFSALPFAQSLSVSIKPFDLVHSDV 476
LGHVSASRLKYL STGALG LQ ++ISDC GCKLA FSALPF++S+S+S PFDLVHSDV
Sbjct: 1 LGHVSASRLKYLASTGALGKLQTSDISDCCGCKLAKFSALPFSKSVSLSYAPFDLVHSDV 60
Query: 477 WGHFPVPTKGGSQYYDSFIDDCTRFCWVYLVKHRSDFYDIYQQFRALVKTQYSSIIKCFR 536
WG PVPTKGGS+YY SFIDD TR+CWVYL+KHRS+F DIY FRA+VKTQ++++IKCFR
Sbjct: 61 WGPSPVPTKGGSRYYVSFIDDYTRYCWVYLMKHRSEFLDIYHMFRAMVKTQHNAVIKCFR 120
Query: 537 CDLGEEYTSNRFRELLAMDGTVHQSSCTDTLEQNGVAERKHRHIFETARSLLLSAFVPSE 596
CDLG EYTSN+F ELLA DGT+HQSSCTDT +QNGVAERKHRHI ETARSLLLSA VPSE
Sbjct: 121 CDLGGEYTSNKFSELLAYDGTLHQSSCTDTPQQNGVAERKHRHIIETARSLLLSASVPSE 180
Query: 597 Y 597
+
Sbjct: 181 F 181