BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0260.1
(107 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABO72547.1 Integrase, catalytic region; Zinc finger, CCHC-type; ... 84 6e-19
CAN67511.1 hypothetical protein VITISV_026953 [Vitis vinifera] 84 3e-17
KHN08225.1 Copia protein, partial [Glycine soja] 78 8e-17
>ABO72547.1 Integrase, catalytic region; Zinc finger, CCHC-type;
Retrotransposon gag protein, putative [Medicago
truncatula]
Length = 120
Score = 84.3 bits (207), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 6 AFLNGDLQEEVYMTPPPGVPH-KPGEVWPPSPMNFNGLNNPVSHERTKHIEIDCHLVREK 64
A L+ +LQ Y+ G+ H +P ++ S + NPV HERTKHIEIDCH VREK
Sbjct: 30 ATLSSELQWLKYLLSDLGIYHPQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREK 89
Query: 65 IGTKLIAPCFTPTAVQLTDIFTKPLGVDALQ 95
I + LI + ++ QL DIFTKPLG DA +
Sbjct: 90 IKSSLITASYIRSSDQLADIFTKPLGDDAYK 120
>CAN67511.1 hypothetical protein VITISV_026953 [Vitis vinifera]
Length = 335
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 1 MDVKDAFLNGDLQEEVYMTPPPGVPH-KPGE-VWPPSPMNFNGLNNPVSHERTKHIEIDC 58
+DVK+AFLNG+L+EEVYM+ P G K G+ ++ + + +NPV H+RTKH+E+D
Sbjct: 224 LDVKNAFLNGELEEEVYMSLPLGFEEDKKGKMLYCDNKATISIAHNPVHHDRTKHVEVDR 283
Query: 59 HLVREKIGTKLIAPCFTPTAVQLTDIFTKPLGVDALQKITCKLGV 103
H + EK+ +I+ + PT ++ DIFTK L A +T KLG+
Sbjct: 284 HFITEKLEKGVISIKYIPTDQEVADIFTKGLPRPAFDFLTSKLGL 328
>KHN08225.1 Copia protein, partial [Glycine soja]
Length = 101
Score = 78.2 bits (191), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 23 GVPHKPGEVWPPSPMNFNGLN--------NPVSHERTKHIEIDCHLVREKIGTKLIAPCF 74
G+ H G + PM F+ N N V HERTKHIE+DCH +R++ T IAP +
Sbjct: 7 GLLHSLG-ISHSQPMRFHCDNQATLHIVKNSVFHERTKHIEVDCHFIRDEYLTSNIAPTY 65
Query: 75 TPTAVQLTDIFTKPLGVDALQKITCKLGV 103
PT QL DIFTK LG+ + CKLG+
Sbjct: 66 VPTHAQLADIFTKALGLTQFTSLLCKLGI 94