BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0290.1
(357 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 417 e-140
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 416 e-134
KYP47640.1 Retrovirus-related Pol polyprotein from transposon TN... 400 e-128
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 417 bits (1071), Expect = e-140, Method: Compositional matrix adjust.
Identities = 204/349 (58%), Positives = 254/349 (72%), Gaps = 5/349 (1%)
Query: 9 NPRGGGCTVQSTVSSQGVYTTKGIDFNEVFSPIVNHSSIRVLDSIVALYDMELKQLDVKT 68
+PR C + V +G Y +GIDFNE+FSP+V H+SIR+L + VAL+D+EL+QLDVKT
Sbjct: 43 DPR---CKARLVV--KGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKT 97
Query: 69 AFLYGELEEQIYMRQPEGFKILGKEDQVCLLKKSLYGLKQSPRQWYKRFDTFMVRNGYDR 128
AFL+GELEE+IYM QPEGF + KE VC LKKSLYGLKQ+PRQWYK+FD+FM+ GY R
Sbjct: 98 AFLHGELEEEIYMDQPEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSR 157
Query: 129 SKYDSYVYHKKLSDSSNVYLLLYVDEMLIACKEMSEVHMLKDQLKGEFGMKNLRASWKTL 188
SKYD +Y ++ D + +YLLLYVD+MLIA ++ S + LK QL EF MK L A+ K L
Sbjct: 158 SKYDDCIYFQQFPDGTFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKIL 217
Query: 189 GMEIRRVRSARKLFLSQKAYVEKGFEHFGMTEAKPVGTPLAAYFKLSGELSPTTDKETEY 248
GMEI R R KLFLSQ+ Y+E+ + F M KPV TPLAA+FKLS +L P T +E E
Sbjct: 218 GMEIHRDRQVGKLFLSQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMER 277
Query: 249 MSRVRYASAVCSIMYAMVCIRPDISHAVSVVSSYMGRSGRGHWQAVKWILRYLGGTAEVG 308
MS V YASAV S+MYAMVC RPD+++AVS+VS YM G+ HW AVKWI RYL GT+ +G
Sbjct: 278 MSHVPYASAVGSLMYAMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIG 337
Query: 309 LVYDRRVDTFGSVVKFVDSDFSRHLDRQWSLTGYTFTLYGSAICWRTVL 357
LV+DR T +V FVDSD+ LDR+ SL+GY FTL SAI W+ L
Sbjct: 338 LVFDRNKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASL 386
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 416 bits (1070), Expect = e-134, Method: Compositional matrix adjust.
Identities = 200/334 (59%), Positives = 248/334 (74%)
Query: 24 QGVYTTKGIDFNEVFSPIVNHSSIRVLDSIVALYDMELKQLDVKTAFLYGELEEQIYMRQ 83
+G Y +GIDFNE+FSP+V H+SIR+L + VAL+D+EL+QLDVKTAFL+GELEE+IYM Q
Sbjct: 582 KGFYQKEGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQ 641
Query: 84 PEGFKILGKEDQVCLLKKSLYGLKQSPRQWYKRFDTFMVRNGYDRSKYDSYVYHKKLSDS 143
PEGF + KE VC LKKSLYGLKQ+PRQWYK+FD+FM+ GY RSKYD +Y ++ D
Sbjct: 642 PEGFVVPSKEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDG 701
Query: 144 SNVYLLLYVDEMLIACKEMSEVHMLKDQLKGEFGMKNLRASWKTLGMEIRRVRSARKLFL 203
+ +YLLLYVD+MLIA ++ S + LK QL EF MK L A+ K LGMEI R R KLFL
Sbjct: 702 TFIYLLLYVDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFL 761
Query: 204 SQKAYVEKGFEHFGMTEAKPVGTPLAAYFKLSGELSPTTDKETEYMSRVRYASAVCSIMY 263
SQ+ Y+E+ + F M KPV TPLAA+FKLS +L P T +E E MS V YASAV S+MY
Sbjct: 762 SQQKYIERLLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMY 821
Query: 264 AMVCIRPDISHAVSVVSSYMGRSGRGHWQAVKWILRYLGGTAEVGLVYDRRVDTFGSVVK 323
AMVC RPD+++AVS+VS YM G+ HW AVKWI RYL GT+ +GLV+DR T +V
Sbjct: 822 AMVCTRPDLAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAG 881
Query: 324 FVDSDFSRHLDRQWSLTGYTFTLYGSAICWRTVL 357
FVDSD+ LDR+ SL+GY FTL SAI W+ L
Sbjct: 882 FVDSDYGGDLDRRRSLSGYIFTLCNSAISWKASL 915
>KYP47640.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1032
Score = 400 bits (1029), Expect = e-128, Method: Compositional matrix adjust.
Identities = 200/341 (58%), Positives = 252/341 (73%), Gaps = 2/341 (0%)
Query: 18 QSTVSSQGVYTTKGIDFNEVFSPIVNHSSIRVLDSIVALYDMELKQLDVKTAFLYGELEE 77
++ + ++G +GID+NEVFSP+V HSSIRVL ++VA DMEL Q+DVKTAFL+G+LEE
Sbjct: 644 KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEE 703
Query: 78 QIYMRQPEGFKILGKEDQVCLLKKSLYGLKQSPRQWYKRFDTFMVRNGYDRSKYDSYVYH 137
+IYM QPEGFK+ GKE+ C L+KSLYGLKQSPRQWYKRFD FM+R Y RSKYD VY
Sbjct: 704 EIYMTQPEGFKVAGKENMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYDHCVYL 763
Query: 138 KKLSDSSNVYLLLYVDEMLIACKEMSEVHMLKDQLKGEFGMKNLRASWKTLGMEIRRVRS 197
+KL D S +YLLLYVD+MLIA K E+ LK QL GEF MK+L + K LGMEI R R
Sbjct: 764 RKLHDGSFIYLLLYVDDMLIASKNKEEIEKLKTQLNGEFEMKDLGEAKKILGMEISRDRK 823
Query: 198 ARKLFLSQKAYVEKGFEHFGMT-EAKPVGTPLAAYFKLSGELSPTTDKETEYMSRVRYAS 256
+L L+QK Y+++ + FG++ E+KPV TPLA++FKLS LSP E YMS+V YAS
Sbjct: 824 LGRLCLTQKEYLKRVLKRFGISDESKPVSTPLASHFKLSANLSPRDAAEKAYMSKVPYAS 883
Query: 257 AVCSIMYAMVCIRPDISHAVSVVSSYMGRSGRGHWQAVKWILRYLGGTAEVGLVYDRRVD 316
AV S+MYAMVC RPDIS+AV VVS YM G+ HWQAVKWILRY+ T +VGLV+ + D
Sbjct: 884 AVGSLMYAMVCTRPDISYAVGVVSRYMHNPGKEHWQAVKWILRYILNTVDVGLVFQQEQD 943
Query: 317 TFGSVVKFVDSDFSRHLDRQWSLTGYTFTLYGSAICWRTVL 357
+VV + DS+++ LD + S TGY FTL + +CWR+ L
Sbjct: 944 G-QNVVGYCDSNYAGDLDNRRSTTGYVFTLAKAPVCWRSTL 983