BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0310.1
(799 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 437 e-137
BAA22288.1 polyprotein [Oryza australiensis] 434 e-132
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 421 e-130
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 437 bits (1124), Expect = e-137, Method: Compositional matrix adjust.
Identities = 215/345 (62%), Positives = 252/345 (73%), Gaps = 31/345 (8%)
Query: 430 EDRTIFENGGGSNLIFLVLYVDDILIVENNIPMLNSVKEWLRKCFSMKDLGDAEYILGIK 489
E+ ++ GS L+ L+LYVDDIL+V N+IPML SVK LRK FSMKDLGDA YILGI+
Sbjct: 552 EEPCVYMKVSGSTLVILILYVDDILLVGNDIPMLESVKSSLRKSFSMKDLGDAAYILGIR 611
Query: 490 IYRDRSRKMIGLSQETYIDKILGRFKMEDSKRGFLPMTHGTTLIKTQCPRDPGELAYMKK 549
IYRDRS+++IGLSQE YIDK+L RF M++SKRGFLPM HG L K QCP E M
Sbjct: 612 IYRDRSKRLIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDERDKMSD 671
Query: 550 VHYASAIGSIMCAMVCTHPDVSYALSMCSRYQSNPGEKHWTAANNILKYLRRTKDHFLVY 609
+ YASAIGSIM AM+CT PDVSYALS+ SRYQ++P E HWTA NILKYLRRTKD FLVY
Sbjct: 672 IPYASAIGSIMYAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYLRRTKDVFLVY 731
Query: 610 GGKDELIVEGHVDARFQTDRDHFRSQS-------------------------------AA 638
GG +EL+V G+ DA FQTD+D +RSQS AA
Sbjct: 732 GGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTEAEYIAA 791
Query: 639 SEAAKEGVWIKKFISELGVVPSIENGVTLYCDNNGAIAQAKEPRAHQKSKHILRKYHVIR 698
SEAAKEGVWI+ FI+ELG+VPS + + LYCDNNGAIAQAKEPR+HQKSKHILR+YH+IR
Sbjct: 792 SEAAKEGVWIRNFITELGMVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIR 851
Query: 699 EITERKDVVICKVDTDDNVADPLTKPLPQPKYESHRRGIDQESLK 743
E+ +R DV ICKV TD N+ADPLTKPL QPK+E+H R I LK
Sbjct: 852 ELVDRGDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIGIRYLK 896
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 434 bits (1117), Expect = e-132, Method: Compositional matrix adjust.
Identities = 213/346 (61%), Positives = 255/346 (73%), Gaps = 31/346 (8%)
Query: 430 EDRTIFENGGGSNLIFLVLYVDDILIVENNIPMLNSVKEWLRKCFSMKDLGDAEYILGIK 489
E+ +++ GS ++FL+LYVDDIL++ N+IPML SVK L+ FSMKDLG+A YILGI+
Sbjct: 972 EEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIR 1031
Query: 490 IYRDRSRKMIGLSQETYIDKILGRFKMEDSKRGFLPMTHGTTLIKTQCPRDPGELAYMKK 549
IYRDRS+++IGLSQ TYIDK+L RF M DSK+GFLPM+HG L K QCP+ E M
Sbjct: 1032 IYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGM 1091
Query: 550 VHYASAIGSIMCAMVCTHPDVSYALSMCSRYQSNPGEKHWTAANNILKYLRRTKDHFLVY 609
V YASAIGSIM AM+CT PDVSYALS SRYQS+PGE HWTA NILKYLRRTKD FLVY
Sbjct: 1092 VPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVY 1151
Query: 610 GGKDELIVEGHVDARFQTDRDHFRSQS-------------------------------AA 638
GG+++L+V G+ DA FQTD+D +RSQS AA
Sbjct: 1152 GGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAA 1211
Query: 639 SEAAKEGVWIKKFISELGVVPSIENGVTLYCDNNGAIAQAKEPRAHQKSKHILRKYHVIR 698
SEAAKE VWIKKF+SELGV+ S ++LYCDN+GAIAQAKEPR+HQKSKHILR+YH+IR
Sbjct: 1212 SEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIR 1271
Query: 699 EITERKDVVICKVDTDDNVADPLTKPLPQPKYESHRRGIDQESLKD 744
EI +R DV ICKV TD N+ADPLTKPLPQPK+E+H R + L D
Sbjct: 1272 EIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYLHD 1317
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 421 bits (1082), Expect = e-130, Method: Compositional matrix adjust.
Identities = 209/339 (61%), Positives = 245/339 (72%), Gaps = 31/339 (9%)
Query: 430 EDRTIFENGGGSNLIFLVLYVDDILIVENNIPMLNSVKEWLRKCFSMKDLGDAEYILGIK 489
E+ +++ GS + FLVLYVDDIL++ N+IP+L SVK WL CFSMKD+G+A YILGI+
Sbjct: 619 EEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIR 678
Query: 490 IYRDRSRKMIGLSQETYIDKILGRFKMEDSKRGFLPMTHGTTLIKTQCPRDPGELAYMKK 549
IYRDR K+IGLSQ+TYIDK+L RF M DSK+GF+PM+HG TL KTQCP E M K
Sbjct: 679 IYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSK 738
Query: 550 VHYASAIGSIMCAMVCTHPDVSYALSMCSRYQSNPGEKHWTAANNILKYLRRTKDHFLVY 609
+ YASAIGSIM AM+ T PDV+ ALSM SRYQS+PGE HW NI KYLRRTKD FLVY
Sbjct: 739 IPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVY 798
Query: 610 GGKDELIVEGHVDARFQTDRDHFRSQS-------------------------------AA 638
GG +EL+V G+ DA FQTD+D FRSQS AA
Sbjct: 799 GGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAA 858
Query: 639 SEAAKEGVWIKKFISELGVVPSIENGVTLYCDNNGAIAQAKEPRAHQKSKHILRKYHVIR 698
SEAAKE VWI+KFI+ELGVVPSI + LYCDNNGAIAQAKEP++HQKSKHI R+YH+IR
Sbjct: 859 SEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIR 918
Query: 699 EITERKDVVICKVDTDDNVADPLTKPLPQPKYESHRRGI 737
EI +R DV I +V TD NVAD TKPLPQPK+ESH I
Sbjct: 919 EIIDRGDVKISRVSTDANVADHFTKPLPQPKHESHTTAI 957