BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0350.1
(260 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis] 104 8e-22
CAD40471.2 OSJNBa0067G20.17 [Oryza sativa Japonica Group] 100 1e-21
AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-clas... 99 4e-20
>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 131/268 (48%), Gaps = 16/268 (5%)
Query: 6 FNLYTILEK--LKDTNFVQWERNLRKVLGESAE--VLDIPIP-VLSETSSDEERKQVDDI 60
F L +ILEK L TNF W RNLR VL + + VL+ PIP V +E ++ +
Sbjct: 13 FALRSILEKEKLNGTNFADWSRNLRIVLRQDKKEHVLEEPIPDVPTENAAAAIKTAYKKA 72
Query: 61 RRKSAPVTGLMLMAMERKYIDMFIDMEAYTIIRRLRDVFGTQCRMERFRITMVTLGMRFE 120
+S V+ LML AM F ++EAY +I L+ +F TQ R ERF I+ G +
Sbjct: 73 CDESLDVSCLMLAAMNSDLQKQFENIEAYDMIVALKGMFETQARTERFEISKNLFGCKLA 132
Query: 121 KGKSIRYHVLEMIDHFKDMEWMRSPMPVDMAVDLILNSLDERFQDVVTNFEDKFGRVSFE 180
+G + HV++M+ + + +E + P+ ++A DLIL SL E + + NF +
Sbjct: 133 EGGPVSPHVIKMVGYTQSLEKLGFPLSQELATDLILASLPESYGQFILNFHMNGLDKNLT 192
Query: 181 SLLAILEVAESRFSTPETLEEILSVQETVNTGTEDVRRRKPSGK-RMGKKVP--KPITIL 237
L +L+ AE S + ++ VQ++ + + K GK ++ K+ KP T
Sbjct: 193 ELHMMLKTAEG--SVKKCNNHVIMVQKSTSFKKKAKTWIKKKGKAKVSDKIQTDKPKTKT 250
Query: 238 PN-----KRCLVCGSTSHIRLRDCPRFL 260
+ C C H + R+C ++L
Sbjct: 251 KSGPTQENECFYCKELGHWK-RNCKKYL 277
>CAD40471.2 OSJNBa0067G20.17 [Oryza sativa Japonica Group]
Length = 276
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 46/284 (16%)
Query: 2 TKNIFNLYTILEK--LKDTNFVQWERNLRKVLGESAE--VLDIPIPV-LSETSSDEERKQ 56
T + FNL +ILEK L TNFV W RNLR VL + + VL+ P P L ++ R++
Sbjct: 7 TSSSFNLRSILEKEKLNGTNFVDWYRNLRIVLRQEHKEFVLEEPFPTDLPNNATAARRRE 66
Query: 57 VDDIRRKSAPVTGLMLMAMERKYIDMFIDMEAYTIIRRLRDVFGTQCRMERFRITMVTLG 116
+ + ++ LML+ + ++ + ++A+TII RL ++F Q R ERF +
Sbjct: 67 HEKRCNEYLDISCLMLVTISPEFQRQYQTLDAHTIITRLCNMFEYQARAERFNTSKSLFA 126
Query: 117 MRFEKGKSIRYHVLEMIDHFKDMEWMRSPMPVDMAVDLILNSLDERFQDVVTNFE-DKFG 175
R +G ++ +V++MI + + +E + P+ ++A+DLIL SL F+ + NF D+
Sbjct: 127 CRLAEGNAVSPNVIKMIGYTESLEKLGFPLSKELAIDLILQSLPPSFKPFIMNFNMDR-- 184
Query: 176 RVSFESLLAILEVAESRFSTPETLEEILSVQETVNTGTEDV---RRRKPSGKRMGKK--- 229
+ L +L+ AE E++ + V + KP+ K+ G+K
Sbjct: 185 --TLAELHGMLKTAE----------------ESIKKNSNYVMVMHKCKPNNKKSGQKRKL 226
Query: 230 VPKPITILPNKR-------------CLVCGSTSHIRLRDCPRFL 260
IT N + C C T H + R+C ++L
Sbjct: 227 NSDEITSTSNSKTKVQKTGPAKDAECFFCKETGHWK-RNCKKYL 269
>AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92973.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 37/277 (13%)
Query: 6 FNLYTILEK--LKDTNFVQWERNLRKVLGESAEVLDIPIPVLSETSSDEERKQVDDIRRK 63
FNL +ILEK L TNF+ W NLR VL + + + P L++ ++ Q + R+
Sbjct: 31 FNLRSILEKEKLTGTNFMDWYHNLRIVLRQEHKEFVLTQPFLADLPNNAPATQRREHERR 90
Query: 64 SAP---VTGLMLMAMERKYIDMFIDMEAYTIIRRLRDVFGTQCRMERFRITMVTLGMRFE 120
++ LML M K + ++A+TII LR++F Q R ERF + R
Sbjct: 91 CNEYLDISCLMLATMSLKLQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLA 150
Query: 121 KGKSIRYHVLEMIDHFKDMEWMRSPMPVDMAVDLILNSLDERFQDVVTNFE-DKFGRVSF 179
+G + HV++MI + + ++ + P+ ++A DLIL SL F+ + NF + R
Sbjct: 151 EGNPVSPHVIKMIGYTESLDKLGFPLSRELATDLILQSLPPSFEPFIMNFNMNNLNRT-- 208
Query: 180 ESLLAILEVAESRFSTPETLEEILSVQETVNTGTEDVRRRKPSGKRMGKK---VPKPITI 236
LA L V T +T EE S+++ N + +RKP+ K+ G+K IT
Sbjct: 209 ---LAELHV------TLKTAEE--SIKKNSNH-VMGMHKRKPNNKKSGQKRKLNSDEITT 256
Query: 237 LPNKR-------------CLVCGSTSHIRLRDCPRFL 260
N + C +C H + R+C ++L
Sbjct: 257 TSNSKTKVQKTGPAKDAECFICKEIGHWK-RNCKKYL 292