BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0720.1
(233 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010246493.1 PREDICTED: probable DNA-directed RNA polymerase I... 307 e-103
XP_002277373.1 PREDICTED: uncharacterized protein LOC100264366 [... 305 e-102
XP_010246495.1 PREDICTED: probable DNA-directed RNA polymerase I... 301 e-101
>XP_010246493.1 PREDICTED: probable DNA-directed RNA polymerase I subunit RPA43
isoform X1 [Nelumbo nucifera] XP_010246494.1 PREDICTED:
probable DNA-directed RNA polymerase I subunit RPA43
isoform X1 [Nelumbo nucifera]
Length = 236
Score = 307 bits (786), Expect = e-103, Method: Compositional matrix adjust.
Identities = 155/236 (65%), Positives = 190/236 (80%), Gaps = 3/236 (1%)
Query: 1 MEGLKVSDANLMVYIHPSRANKVREAILRELSSLLFKFNEIFDGAVLAYDVAIPNKNAKI 60
MEGLKVSDANL+VYIHPS+A KV ++ILRELS+LLFK+NEIFDG VLAYDV I NKNAK+
Sbjct: 1 MEGLKVSDANLVVYIHPSKAGKVSQSILRELSTLLFKYNEIFDGVVLAYDVTIQNKNAKV 60
Query: 61 LSGVHPFFGVNLKAKLLLFSPKPDMLLEGKVVKLEKESIHIIVLAFSSAAIMEEDIREDF 120
L G++P FGV LKAK+LLFSPKPDMLLEGKVVKL KES+H+IVL FSSA+I EEDIRE+F
Sbjct: 61 LPGIYPCFGVKLKAKMLLFSPKPDMLLEGKVVKLGKESLHVIVLGFSSASIAEEDIREEF 120
Query: 121 KYKIKHGEEVFASKSHKRHVIKVGSTVRFIVKSLDEEILHISGSLLPSNTGEIEWLDKHT 180
+Y+IKHGEEVFAS SHKRHVIKVGS ++F+VKS DEEILHISGSL+P NTG +WL K+
Sbjct: 121 RYRIKHGEEVFASTSHKRHVIKVGSMIQFLVKSFDEEILHISGSLIPVNTGSTKWLHKNM 180
Query: 181 DEVSHLERSVKRERESGKGKT---GHDLGKPDEGEYANNNHHRSKKSKRRRTEEES 233
+E S ++R R+++ ++ H D+ ++ N R KKSKR+R E+S
Sbjct: 181 EEGSMVDRLETRKKKRKDDRSEMHEHSTELLDDVGFSLKNEGRPKKSKRQRHAEQS 236
>XP_002277373.1 PREDICTED: uncharacterized protein LOC100264366 [Vitis vinifera]
XP_010664789.1 PREDICTED: uncharacterized protein
LOC100264366 [Vitis vinifera] CBI19833.3 unnamed protein
product, partial [Vitis vinifera]
Length = 233
Score = 305 bits (781), Expect = e-102, Method: Compositional matrix adjust.
Identities = 158/233 (67%), Positives = 192/233 (82%)
Query: 1 MEGLKVSDANLMVYIHPSRANKVREAILRELSSLLFKFNEIFDGAVLAYDVAIPNKNAKI 60
MEGL+VSDANL+VY+HPS+AN+V +AILRELSSLLFKFNEIFDG VLAYDV IP+K+AKI
Sbjct: 1 MEGLRVSDANLIVYVHPSKANRVSQAILRELSSLLFKFNEIFDGVVLAYDVDIPSKDAKI 60
Query: 61 LSGVHPFFGVNLKAKLLLFSPKPDMLLEGKVVKLEKESIHIIVLAFSSAAIMEEDIREDF 120
L G+HP+FGV LKAKLLLFSPKP+ML+EGKVVKL +ESIHI+VL FSSA I +E+IR +F
Sbjct: 61 LPGIHPYFGVRLKAKLLLFSPKPNMLIEGKVVKLAQESIHIVVLGFSSAIITDEEIRGEF 120
Query: 121 KYKIKHGEEVFASKSHKRHVIKVGSTVRFIVKSLDEEILHISGSLLPSNTGEIEWLDKHT 180
KYKIKHGE VF S+SHKRHVIKVG+ +RF+VKSLDEEILHISGSL P +TG I WLDK
Sbjct: 121 KYKIKHGEAVFVSRSHKRHVIKVGTMIRFLVKSLDEEILHISGSLNPPHTGSILWLDKKL 180
Query: 181 DEVSHLERSVKRERESGKGKTGHDLGKPDEGEYANNNHHRSKKSKRRRTEEES 233
++ S RS K+ RE+G+ + + D G ++ +N H KKSK+R+ EES
Sbjct: 181 EDASPSSRSTKKRRENGESREMQEHDTVDGGVFSLDNSHHIKKSKKRKISEES 233
>XP_010246495.1 PREDICTED: probable DNA-directed RNA polymerase I subunit RPA43
isoform X2 [Nelumbo nucifera]
Length = 232
Score = 301 bits (771), Expect = e-101, Method: Compositional matrix adjust.
Identities = 156/233 (66%), Positives = 189/233 (81%), Gaps = 1/233 (0%)
Query: 1 MEGLKVSDANLMVYIHPSRANKVREAILRELSSLLFKFNEIFDGAVLAYDVAIPNKNAKI 60
MEGLKVSDANL+VYIHPS+A KV ++ILRELS+LLFK+NEIFDG VLAYDV I NKNAK+
Sbjct: 1 MEGLKVSDANLVVYIHPSKAGKVSQSILRELSTLLFKYNEIFDGVVLAYDVTIQNKNAKV 60
Query: 61 LSGVHPFFGVNLKAKLLLFSPKPDMLLEGKVVKLEKESIHIIVLAFSSAAIMEEDIREDF 120
L G++P FGV LKAK+LLFSPKPDMLLEGKVVKL KES+H+IVL FSSA+I EEDIRE+F
Sbjct: 61 LPGIYPCFGVKLKAKMLLFSPKPDMLLEGKVVKLGKESLHVIVLGFSSASIAEEDIREEF 120
Query: 121 KYKIKHGEEVFASKSHKRHVIKVGSTVRFIVKSLDEEILHISGSLLPSNTGEIEWLDKHT 180
+Y+IKHGEEVFAS SHKRHVIKVGS ++F+VKS DEEILHISGSL+P NTG +WL K+
Sbjct: 121 RYRIKHGEEVFASTSHKRHVIKVGSMIQFLVKSFDEEILHISGSLIPVNTGSTKWLHKNM 180
Query: 181 DEVSHLERSVKRERESGKGKTGHDLGKPDEGEYANNNHHRSKKSKRRRTEEES 233
+E S ++R KR+ + + H D+ ++ N R KKSKR+R E+S
Sbjct: 181 EEGSMVDRKKKRKDDRSEMHE-HSTELLDDVGFSLKNEGRPKKSKRQRHAEQS 232