BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0780.1
(191 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP64702.1 Retrovirus-related Pol polyprotein from transposon TN... 172 2e-50
AAK70406.1 pol polyprotein [Citrus x paradisi] 172 4e-50
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 174 2e-48
>KYP64702.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 279
Score = 172 bits (437), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 106/145 (73%), Gaps = 7/145 (4%)
Query: 1 MANPGKTHWEVVKWVLRYLKGTVGTVFAFVETHVRVHGTLVNWQSMLQSTVALSTTEVEY 60
M+NPGK HWE VKW++RYLKGT + + W++ LQ TVALSTTE EY
Sbjct: 129 MSNPGKAHWEAVKWIMRYLKGTSNICLVYGSNDI-------GWKATLQPTVALSTTEAEY 181
Query: 61 MAMTKGVKEPLWLWGLLDDLGIKKERVDVWCDSQSAIYLAKNRVHHARTKHIDVRYHFVR 120
M++T+GVKE +WL GL+D LG+ +R ++CDSQSA+ LAKN V+H R+KHIDVR++F+R
Sbjct: 182 MSLTEGVKEGIWLQGLIDSLGLNVQRRILYCDSQSALCLAKNPVYHERSKHIDVRFNFIR 241
Query: 121 DVVEEGDVSLMKVHTDENPADMLTK 145
DV+EE S+ K+ T +NPADMLTK
Sbjct: 242 DVIEEKLFSIEKIATVDNPADMLTK 266
>AAK70406.1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 172 bits (436), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 113/172 (65%), Gaps = 26/172 (15%)
Query: 1 MANPGKTHWEVVKWVLRYLKGTVGTVFAFVETH--------------------------V 34
M NPGK+ W VKW+LRYL GTV F +
Sbjct: 107 MHNPGKSQWLAVKWILRYLYGTVDVGLLFKKNCGQQCVGYCDSDFAGDLDKQRSTSGYVF 166
Query: 35 RVHGTLVNWQSMLQSTVALSTTEVEYMAMTKGVKEPLWLWGLLDDLGIKKERVDVWCDSQ 94
+ G V+W+S+LQST+ALSTTE EY+A T+ VKE +WL GLL DLG+ +E + V+CD+Q
Sbjct: 167 TLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQ 226
Query: 95 SAIYLAKNRVHHARTKHIDVRYHFVRDVVEEGDVSLMKVHTDENPADMLTKV 146
SAI+LAKN+ +HARTKHIDV+YH+VR+++E GDV L K+ T +NP+DMLTKV
Sbjct: 227 SAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKV 278
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) CAA37917.1 reverse
transcriptase, partial [Arabidopsis thaliana]
Length = 587
Score = 174 bits (442), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 109/171 (63%), Gaps = 26/171 (15%)
Query: 1 MANPGKTHWEVVKWVLRYLKGTVGTVFAFV-ETHVRVH---------------------- 37
MA PG HWE VKW+LRY++G+ F E RV
Sbjct: 397 MARPGSIHWEAVKWILRYMRGSQDLNLVFTKEKEFRVTGYCDSDYAADLDRRRSVSGYVF 456
Query: 38 ---GTLVNWQSMLQSTVALSTTEVEYMAMTKGVKEPLWLWGLLDDLGIKKERVDVWCDSQ 94
G V+W++ LQS ALSTTE E+MA+T+ KE LW+ GL+ DLG+++++V +WCDSQ
Sbjct: 457 TVGGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQ 516
Query: 95 SAIYLAKNRVHHARTKHIDVRYHFVRDVVEEGDVSLMKVHTDENPADMLTK 145
SAI L+KN HH RTKHIDVRY+F+RDVVE GDV ++K+HT NPAD LTK
Sbjct: 517 SAICLSKNSTHHERTKHIDVRYNFIRDVVEAGDVDVLKIHTSRNPADALTK 567