BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0790.1
(113 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KHN08680.1 Pentatricopeptide repeat-containing protein [Glycine ... 122 3e-31
KHN03719.1 Pentatricopeptide repeat-containing protein [Glycine ... 122 2e-30
XP_016650642.1 PREDICTED: putative pentatricopeptide repeat-cont... 100 1e-22
>KHN08680.1 Pentatricopeptide repeat-containing protein [Glycine soja]
Length = 362
Score = 122 bits (305), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 77/133 (57%), Gaps = 27/133 (20%)
Query: 1 MYSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCM 60
MYSS G A +VFDEI QPDLP WN +I N K G I +ARKLFD++P RNVISWSCM
Sbjct: 51 MYSSRGTLTFARQVFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCM 110
Query: 61 INGL---GEDK------------------------DVMAWSAMISGLAMHGHNEEFFNLF 93
I+G GE K DVMAWSAMI+ AMHG +EE LF
Sbjct: 111 IHGYASCGEYKAALSLFRSLQTLEGSKVQPNELCADVMAWSAMITAFAMHGLSEECLELF 170
Query: 94 LQMQNHGVMPNNV 106
+M N GV PN V
Sbjct: 171 ARMVNDGVRPNAV 183
>KHN03719.1 Pentatricopeptide repeat-containing protein [Glycine soja]
Length = 540
Score = 122 bits (306), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 77/133 (57%), Gaps = 27/133 (20%)
Query: 1 MYSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCM 60
MYSS G A +VFDEI QPDLP WN +I N K G I +ARKLFD++P RNVISWSCM
Sbjct: 138 MYSSRGTLTFARQVFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCM 197
Query: 61 INGL---GEDK------------------------DVMAWSAMISGLAMHGHNEEFFNLF 93
I+G GE K DVMAWSAMI+ AMHG +EE LF
Sbjct: 198 IHGYASCGEYKAALSLFRSLQTLEGSKVQPNELCADVMAWSAMITAFAMHGLSEECLELF 257
Query: 94 LQMQNHGVMPNNV 106
+M N GV PN V
Sbjct: 258 ARMVNDGVRPNAV 270
>XP_016650642.1 PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Prunus mume]
Length = 561
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 15/118 (12%)
Query: 2 YSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCMI 61
Y+S G D AHR+FD++PQ ++ WN++IS VK+G + AR++FD++PE+NV+S++ MI
Sbjct: 195 YASVGDLDEAHRLFDQMPQRNVVSWNVIISGFVKLGDLTNARRIFDQMPEKNVVSFTTMI 254
Query: 62 NGLGE---------------DKDVMAWSAMISGLAMHGHNEEFFNLFLQMQNHGVMPN 104
+G + +KD++AWSA+ISG A +G E +FL+M V P+
Sbjct: 255 DGYAKYGDMASARFLFDQAPNKDIVAWSALISGYAQNGQPNEVVKIFLEMSTRNVKPD 312
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 21/115 (18%)
Query: 3 SSCGCFDSAHRVFDEIPQPDLPLWN-----LVISMNVKMGYIEMARKLFDEVPERNVISW 57
S GC A V + Q + + +I MN K G +E A LFD++P+R++IS+
Sbjct: 324 SQVGCLQVAKWVDSYVSQSSIDVRQDHVHAALIDMNAKCGNMERATSLFDKMPKRDMISY 383
Query: 58 SCMINGLGEDKDVMAWSAMISGLAMHGHNEEFFNLFLQMQNHGVMPNNVQCSLIL 112
+MI GL++HG ++ LF +M N G+ P+ V ++IL
Sbjct: 384 C----------------SMIQGLSVHGRGDQAVALFNKMLNEGLAPDEVAFTVIL 422