BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0870.1
(308 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAT65344.1 Retrovirus-related Pol polyprotein from transposon TN... 265 8e-84
AAK70406.1 pol polyprotein [Citrus x paradisi] 250 6e-79
KYP42039.1 Retrovirus-related Pol polyprotein from transposon TN... 253 1e-78
>JAT65344.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 346
Score = 265 bits (676), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 169/253 (66%), Gaps = 29/253 (11%)
Query: 1 MQNAKAVSTPLAPHFRPSGRQSPTIMVEKDHMYRVPYASAVGSLMYAMVCTRPDISQAVS 60
M +AK VSTPLA HF+ S SP E+ +M RVPY+SAVGSLMYAMVCTRPDISQAVS
Sbjct: 94 MWDAKPVSTPLAVHFKLSASLSPQSTDEEVYMSRVPYSSAVGSLMYAMVCTRPDISQAVS 153
Query: 61 VVSRFTANPGKTHWEAVKRVLRYLKGTANTGLCFGGDTCQVSGYVDSDYAGDLDRRRSTA 120
VVSR+ +NPGK HW+AVK + RYLKGT NT L FG ++ +SGYVDSD+AGDLDRRRS
Sbjct: 154 VVSRYMSNPGKVHWQAVKWIFRYLKGTVNTCLEFGRNSDILSGYVDSDFAGDLDRRRSLT 213
Query: 121 SYVFRVHG----------------------------APEALWLWGLLDDLGINQECVDVW 152
YVF V G EA+WL GLL +L + + ++
Sbjct: 214 GYVFSVGGCAVSWKATLQPTVALSTTETEFMAATEAVKEAMWLRGLLGELSLGHKETIIY 273
Query: 153 CDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVHTDENPADMLTKVVTCS 212
CDSQSAIHLAKN V HARTKHI +RYHF+R+++ G +SL K+ EN ADMLTK+VT +
Sbjct: 274 CDSQSAIHLAKNPVFHARTKHIQLRYHFIRELLNGGTLSLKKIRGTENIADMLTKIVT-T 332
Query: 213 NRMKLQEADISFK 225
+++L A + +
Sbjct: 333 EKLRLCIASVGLR 345
>AAK70406.1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 250 bits (639), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 129/237 (54%), Positives = 158/237 (66%), Gaps = 29/237 (12%)
Query: 3 NAKAVSTPLAPHFRPSGRQSPTIMVEKDHMYRVPYASAVGSLMYAMVCTRPDISQAVSVV 62
K V TPLA HF+ S P E+D+M VPYAS VGSL+YAMVCTRPDISQAVS+V
Sbjct: 44 KTKLVCTPLALHFKLSSSSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMV 103
Query: 63 SRFTANPGKTHWEAVKRVLRYLKGTANTGLCFGGDTCQ-VSGYVDSDYAGDLDRRRSTAS 121
SR+ NPGK+ W AVK +LRYL GT + GL F + Q GY DSD+AGDLD++RST+
Sbjct: 104 SRYMHNPGKSQWLAVKWILRYLYGTVDVGLLFKKNCGQQCVGYCDSDFAGDLDKQRSTSG 163
Query: 122 YVFRVHGAP----------------------------EALWLWGLLDDLGINQECVDVWC 153
YVF + G EA+WL GLL DLG+ QE + V+C
Sbjct: 164 YVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFC 223
Query: 154 DSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVHTDENPADMLTKVVT 210
D+QSAI LAKNQ +HARTKHIDV+YH+VR++IE GDV L K+ T +NP+DMLTKVV+
Sbjct: 224 DNQSAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVS 280
>KYP42039.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 394
Score = 253 bits (646), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 127/238 (53%), Positives = 155/238 (65%), Gaps = 31/238 (13%)
Query: 1 MQNAKAVSTPLAPHFRPSGRQSPTIMVEKDHMYRVPYASAVGSLMYAMVCTRPDISQAVS 60
M N K VSTPLA HF+ S P E + M VPYASAVGSLMYAMVCTRPD++ AVS
Sbjct: 138 MNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPDLAYAVS 197
Query: 61 VVSRFTANPGKTHWEAVKRVLRYLKGTANTGLCF---GGDTCQVSGYVDSDYAGDLDRRR 117
+VSR+ NPGK HW AVK + RYLKGT+N GL F T V+G+VDSDY GDLDRRR
Sbjct: 198 MVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGGDLDRRR 257
Query: 118 STASYVFRV----------------------------HGAPEALWLWGLLDDLGINQECV 149
S + Y+F + G EALW+ GL+ +LG+ Q+ +
Sbjct: 258 SLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVL 317
Query: 150 DVWCDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEEGDVSLMKVHTDENPADMLTK 207
V+CDSQSAIHL KN +H +TKHIDV++HF+RD++ G+V L KVHT ENPADMLTK
Sbjct: 318 TVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPADMLTK 375