BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1090.1
(269 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_016647164.1 PREDICTED: uncharacterized mitochondrial protein ... 98 5e-21
KYP62232.1 Retrovirus-related Pol polyprotein from transposon TN... 97 7e-21
KYP38661.1 Retrovirus-related Pol polyprotein from transposon TN... 100 2e-20
>XP_016647164.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like
[Prunus mume]
Length = 224
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 199 SDGSVKRYKARLVAKGCNQVEGLDYHDTFPPVAKLVTVRVLLSVASIKGWPLHQLDFITP 258
SDGS++RYKARLVAKG Q EG+DYHDTF P AK+VTVR +L++A+ + W LHQLD
Sbjct: 56 SDGSIERYKARLVAKGYTQTEGIDYHDTFSPTAKMVTVRCILALAAAQNWSLHQLDVHNA 115
Query: 259 FFKATSMRR 267
F SMR+
Sbjct: 116 FLHGISMRK 124
>KYP62232.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 229
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%)
Query: 196 SFKSDGSVKRYKARLVAKGCNQVEGLDYHDTFPPVAKLVTVRVLLSVASIKGWPLHQLDF 255
+KSDG+++RYKARLVAKG NQ+EGLDY DTF PVAK+ TVR+LL++AS + W LHQLD
Sbjct: 35 KYKSDGTIERYKARLVAKGYNQIEGLDYFDTFAPVAKITTVRMLLAIASCQKWELHQLDI 94
Query: 256 ITPFF 260
F
Sbjct: 95 NNAFL 99
>KYP38661.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 778
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 197 FKSDGSVKRYKARLVAKGCNQVEGLDYHDTFPPVAKLVTVRVLLSVASIKGWPLHQLDFI 256
++SDGS++RYKARLVAKG Q+EG+DYHDTF PVAKLV VR+LLS+A+IK W LHQLD
Sbjct: 388 YRSDGSIERYKARLVAKGYAQIEGIDYHDTFAPVAKLVIVRLLLSIAAIKNWSLHQLDVN 447
Query: 257 TPFFKA 262
F +
Sbjct: 448 NDFLQG 453