BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1490.1
(253 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
OAP05597.1 hypothetical protein AXX17_AT3G19150 [Arabidopsis tha... 67 2e-10
XP_010512788.1 PREDICTED: DNA-directed RNA polymerases IV and V ... 70 3e-10
ABG29322.1 DNA-directed RNA polymerase II 135 kDa polypeptide, p... 69 4e-10
>OAP05597.1 hypothetical protein AXX17_AT3G19150 [Arabidopsis thaliana]
Length = 148
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Query: 1 MIESLIFMGPT-YQSLIRMPEDKVKFRNTRPVHPWTRQPVVE 41
M+ SLIFMGPT YQ L+ M EDKVKFRNT PVHP TRQPV +
Sbjct: 1 MMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVAD 42
>XP_010512788.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Camelina sativa] XP_010512793.1 PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Camelina sativa]
Length = 1166
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1 MIESLIFMGPT-YQSLIRMPEDKVKFRNTRPVHPWTRQPVVEVRSEVHIAGFGSCKR 56
M+ SLIFMGPT YQ L+ M EDKVKFRNT PVHP TRQPV R FG +R
Sbjct: 1018 MMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVAXDRKRFGGIKFGEMER 1074
>ABG29322.1 DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Solanum bulbocastanum]
Length = 304
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Query: 1 MIESLIFMGPT-YQSLIRMPEDKVKFRNTRPVHPWTRQPVVE 41
M+ SLIFMGPT YQ LI M EDKVKFRNT PVHP TRQPV +
Sbjct: 158 MVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVAD 199