BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0030.1
(108 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP51654.1 Copia protein, partial [Cajanus cajan] 149 1e-43
KYP39293.1 Retrovirus-related Pol polyprotein from transposon TN... 153 3e-42
AFP55546.1 gag-pol polyprotein [Rosa rugosa] 155 5e-42
>KYP51654.1 Copia protein, partial [Cajanus cajan]
Length = 211
Score = 149 bits (377), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 83/102 (81%)
Query: 1 MHNPSEEHMKAVFRILRYLKKYPGKIFLFRKGGDMEVMGYTDADWAGDITDMRSTSGYFT 60
MH+PSEEHM AV+RIL+YLK PGK LF K + GYTD+DWAGD T +STSGYFT
Sbjct: 17 MHSPSEEHMTAVYRILKYLKGSPGKGLLFSKNDRACIEGYTDSDWAGDKTTRQSTSGYFT 76
Query: 61 FVCGNMVTFRAKKQKVVARSSAESELRGMAQGVCELLWIYTV 102
FV GN+VT+R+KKQKVVARSSAE+E RGMA G+CELLWI ++
Sbjct: 77 FVEGNLVTWRSKKQKVVARSSAEAEFRGMAYGICELLWIRSI 118
>KYP39293.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 500
Score = 153 bits (386), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 83/99 (83%)
Query: 1 MHNPSEEHMKAVFRILRYLKKYPGKIFLFRKGGDMEVMGYTDADWAGDITDMRSTSGYFT 60
MHNPS +HMKAV RIL+YLK PGK +F K ++V GYTDADWAGD T+ RSTSGYFT
Sbjct: 306 MHNPSTDHMKAVMRILQYLKSSPGKGLMFTKNDHLQVEGYTDADWAGDTTNRRSTSGYFT 365
Query: 61 FVCGNMVTFRAKKQKVVARSSAESELRGMAQGVCELLWI 99
FV GN+VT+R+KKQKVV+ SSAE+E RGMA+G+CELLWI
Sbjct: 366 FVGGNLVTWRSKKQKVVSLSSAEAEFRGMAKGLCELLWI 404
>AFP55546.1 gag-pol polyprotein [Rosa rugosa]
Length = 1180
Score = 155 bits (393), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 71/99 (71%), Positives = 84/99 (84%)
Query: 1 MHNPSEEHMKAVFRILRYLKKYPGKIFLFRKGGDMEVMGYTDADWAGDITDMRSTSGYFT 60
MHNPSE HM AVFRIL+YLK PGK +F K ++V GYTDADWAG ITD RSTSGYFT
Sbjct: 986 MHNPSEAHMDAVFRILQYLKSAPGKGLIFSKYSHLDVSGYTDADWAGSITDRRSTSGYFT 1045
Query: 61 FVCGNMVTFRAKKQKVVARSSAESELRGMAQGVCELLWI 99
FV GN+VT+++KKQKVVARSSAE+E RGMA+G+CE+LW+
Sbjct: 1046 FVGGNLVTWKSKKQKVVARSSAEAEYRGMARGLCEMLWL 1084