BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0050.1
(186 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP39692.1 Retrovirus-related Pol polyprotein from transposon TN... 127 1e-30
KYP36170.1 Retrovirus-related Pol polyprotein from transposon TN... 126 2e-30
XP_011470560.1 PREDICTED: uncharacterized protein LOC101303284 [... 126 2e-30
>KYP39692.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1082
Score = 127 bits (318), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 83 PTTVN--DVQPRRSERYTKGIPKFTYKPDINSKVKYPISDYVSTNRLSKSFTCTMNQLSS 140
PT+ N ++Q RRSER KGIPK Y+PD KVKYPIS YVS++RLS+S+ T++QLS
Sbjct: 508 PTSSNTHNIQIRRSERQNKGIPKPVYEPDPRVKVKYPISSYVSSHRLSESYALTVDQLSI 567
Query: 141 VSIPSNLQEALSDPRWKKAMNEEMNVLQKNSTWELVDKPHGYRIVG 186
VSIP+++QEAL DPRWK+AMN EM LQKN TW+L P G + +G
Sbjct: 568 VSIPNSVQEALEDPRWKQAMNIEMEALQKNETWKLTSLPSGKKTIG 613
>KYP36170.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 953
Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 83 PTTVN--DVQPRRSERYTKGIPKFTYKPDINSKVKYPISDYVSTNRLSKSFTCTMNQLSS 140
PT+ N ++Q RRSER KGIPK Y+PD KVKYPIS YVS++RLS+S+ T++QLS
Sbjct: 508 PTSSNTHNIQIRRSERQNKGIPKPVYEPDPRVKVKYPISSYVSSHRLSESYALTVDQLSI 567
Query: 141 VSIPSNLQEALSDPRWKKAMNEEMNVLQKNSTWELVDKPHGYRIVG 186
VSIP+++QEAL DPRWK+AMN EM LQKN TW+L P G + +G
Sbjct: 568 VSIPNSVQEALEDPRWKQAMNIEMEALQKNETWKLTSLPSGKKTIG 613
>XP_011470560.1 PREDICTED: uncharacterized protein LOC101303284 [Fragaria vesca
subsp. vesca]
Length = 1602
Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 87/127 (68%), Gaps = 3/127 (2%)
Query: 63 FLTPSTEDLPQNVEPQVLLDPTTVNDVQ---PRRSERYTKGIPKFTYKPDINSKVKYPIS 119
F TP T++ NV PQV LD + +V R+S+R TKGI K +PDI +K KYPI+
Sbjct: 283 FSTPLTQEFATNVPPQVSLDSNQLYEVDNFVTRKSQRVTKGISKKQDEPDIKAKTKYPIA 342
Query: 120 DYVSTNRLSKSFTCTMNQLSSVSIPSNLQEALSDPRWKKAMNEEMNVLQKNSTWELVDKP 179
+Y+S +RL S +NQLSSVSIPS +Q+ ++DP+W +AMNEE+ LQ NSTW++V KP
Sbjct: 343 NYMSNHRLVGSHALVINQLSSVSIPSTVQDVMTDPKWTQAMNEELEALQINSTWDIVPKP 402
Query: 180 HGYRIVG 186
G + VG
Sbjct: 403 AGKKTVG 409