BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0330.1
(243 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010676254.1 PREDICTED: uncharacterized protein LOC104892119 [... 239 5e-69
KYP62383.1 Retrovirus-related Pol polyprotein from transposon TN... 226 6e-67
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 233 9e-67
>XP_010676254.1 PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 239 bits (610), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 168/241 (69%), Gaps = 6/241 (2%)
Query: 7 PSCGDIGSTEAQVVEVEDEDQRVSRNHDQVEHQDSTQDEEIDEQDNEEVQGVGSDKPLRH 66
P I T + V V DE V +H++ + + + ++ E+++G + P R+
Sbjct: 825 PVSSPIVETSQRDVAVVDETADVESDHEETVVEGQKRPRKKTQRLIEQIEG--RNVPGRN 882
Query: 67 YRKANVVEYALSVEDD----ESVTFKQAITAEESESWLVAMQEETESLHKNKTWEVVPLP 122
++ YAL V +D E +++K+A+++ ES WLVAM EE ESLHKN+TWE+V +P
Sbjct: 883 CCVEEMIGYALHVAEDIESPEPMSYKEAVSSNESAKWLVAMSEEMESLHKNQTWELVRIP 942
Query: 123 EGKSVISCKWVYMKKEDSSEIKDTRYKERLVAKGYAQKEGVDYNEIFSPVVKHTSIRVLL 182
+G+ V+ CKWV+ +KE +SE + RYK RLVAKG++Q+EGVDYNEIFSPVV+HTSIRVLL
Sbjct: 943 QGRKVVGCKWVFKRKEGTSEGESVRYKARLVAKGFSQREGVDYNEIFSPVVRHTSIRVLL 1002
Query: 183 SIVAHSDLELKQLHVKTAFLHEDLEEEIYMAQPEGYKVEGKENQVCRLKKLFYELKQSPR 242
++VAH DLEL+QL VKTAFLH +LEE+I M+QPEG+ V GKE C LKK Y LKQSPR
Sbjct: 1003 AMVAHFDLELEQLDVKTAFLHGELEEDILMSQPEGFVVPGKEKFACSLKKSLYGLKQSPR 1062
Query: 243 Q 243
Q
Sbjct: 1063 Q 1063
>KYP62383.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 595
Score = 226 bits (575), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 143/185 (77%), Gaps = 4/185 (2%)
Query: 62 KPLRHYRKANVVEYALS----VEDDESVTFKQAITAEESESWLVAMQEETESLHKNKTWE 117
KP Y ++ YAL ++ DE T+K+AI+ E+E W++AM+EE ESL+KN+TW+
Sbjct: 411 KPPERYGFEDMATYALHAAEEIDSDEPTTYKEAISHPEAEKWILAMREEMESLYKNQTWK 470
Query: 118 VVPLPEGKSVISCKWVYMKKEDSSEIKDTRYKERLVAKGYAQKEGVDYNEIFSPVVKHTS 177
+V LP+G+ V+ CKW+Y KK SE ++ RYK RLVAKG++QKEGVD+NEIFSPVV+HTS
Sbjct: 471 LVELPKGRHVVGCKWIYKKKSIFSEKEEIRYKARLVAKGFSQKEGVDFNEIFSPVVRHTS 530
Query: 178 IRVLLSIVAHSDLELKQLHVKTAFLHEDLEEEIYMAQPEGYKVEGKENQVCRLKKLFYEL 237
IRVLL+IVA+ D+EL+QL VKTAFLH LEE I M QPEG++V+GKE VC+L++ Y L
Sbjct: 531 IRVLLAIVANQDMELEQLDVKTAFLHGRLEENILMKQPEGFEVQGKEGYVCQLQRSLYGL 590
Query: 238 KQSPR 242
KQSPR
Sbjct: 591 KQSPR 595
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 233 bits (593), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 113/199 (56%), Positives = 146/199 (73%), Gaps = 11/199 (5%)
Query: 56 QGVGSDKPLR-------HYRKANVVEYALSVEDD----ESVTFKQAITAEESESWLVAMQ 104
Q + D+P R Y ++V YAL V ++ E T+K+AI + +SE W AM
Sbjct: 752 QSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMG 811
Query: 105 EETESLHKNKTWEVVPLPEGKSVISCKWVYMKKEDSSEIKDTRYKERLVAKGYAQKEGVD 164
+E ESLHKN+TW++V P G+ +I+CKWV+ KKE S + +YK R+VA+G+ Q+EGVD
Sbjct: 812 DEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVD 871
Query: 165 YNEIFSPVVKHTSIRVLLSIVAHSDLELKQLHVKTAFLHEDLEEEIYMAQPEGYKVEGKE 224
YNEIFSPVV+HTSIRVLL+IVAH +LEL+QL VKTAFLH +LEEEIYM QP+G++V GKE
Sbjct: 872 YNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKE 931
Query: 225 NQVCRLKKLFYELKQSPRQ 243
N VC+LKK Y LKQSPRQ
Sbjct: 932 NHVCKLKKSLYGLKQSPRQ 950