BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0340.1
(236 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC12735.1 putative retrovirus-related polyprotein, partial [Lit... 223 6e-70
AAP53216.2 retrotransposon protein, putative, Ty1-copia subclass... 206 1e-57
CAD41912.2 OSJNBa0033G05.13 [Oryza sativa Japonica Group] 196 6e-54
>AAC12735.1 putative retrovirus-related polyprotein, partial [Lithospermum
erythrorhizon]
Length = 244
Score = 223 bits (568), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 114/167 (68%), Positives = 139/167 (83%), Gaps = 1/167 (0%)
Query: 1 MRGTRYGNLYQLLGTTITGDVAVGISG-RDPMASTRLWHMRLGHMSEKGLSLMCGKGLLK 59
M+G +GNLY L+GT +TGD+AVG+ G +D T +WHMRLGHMSEKGLSL+ G+GLLK
Sbjct: 74 MKGVSHGNLYPLVGTMVTGDLAVGVVGHKDQTECTMIWHMRLGHMSEKGLSLLSGQGLLK 133
Query: 60 DMKKPCMEFCEHCVFGKAHRVTFSTSKHMSKEILDYVHTDVRGPAKLASKGGSKYFVTFV 119
+MKK CMEFCEH V+GK HR+ F TSKH S+ +LDYVHTD+ GPAK+ SK GS YFVTFV
Sbjct: 134 NMKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLWGPAKVNSKDGSWYFVTFV 193
Query: 120 DDHSRFVWLYFLKHKNEVFNTFLVWKAMVENKTGRKLKTLRSNNGTE 166
DD+SR+ W+YFLKHKNEVF+ F W+AMVEN+TGRKLKT+RS+NG E
Sbjct: 194 DDYSRYAWIYFLKHKNEVFDIFKQWRAMVENRTGRKLKTVRSDNGKE 240
>AAP53216.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 206 bits (525), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/265 (42%), Positives = 144/265 (54%), Gaps = 52/265 (19%)
Query: 7 GNLYQLLGTTITGDVAVGISGRDPMASTRLWHMRLGHMSEKGLSLMCGKGLLKDMKKPCM 66
NLY L GTTI G+VA +T LWHMRLGHMSE GL+ + +GLL +
Sbjct: 421 ANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKL 480
Query: 67 EFCEHCVFGKAHRVTFSTSKHMSKEILDYVHTDVRGPAKLASKGGSKYFVTFVDDHSRFV 126
+FCEHC+FGK RV F+TS H ++ ILDYVH+D+ GPA+ S GG++Y +T VDD+SR V
Sbjct: 481 KFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKV 540
Query: 127 WLYFLKHKNEVFNTFLVWKAMVENKTGRKLKTLRSNNGTE-------------------- 166
W YFLKHK + F+ F WK MVE +T RK+K LR++NG +
Sbjct: 541 WPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYT 600
Query: 167 --------------------------------SPHSSLDGGIPYEVRSGEYADYERLRVF 194
SP ++D P +V SG A+Y LRVF
Sbjct: 601 VPHTPQQNGVAERLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVF 660
Query: 195 GCTANYHVKGNKLDNRAQKAIFLGY 219
GC A HV +KL+ RA K IFLGY
Sbjct: 661 GCIAYAHVDNSKLEPRAIKCIFLGY 685
>CAD41912.2 OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 196 bits (497), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 146/283 (51%), Gaps = 68/283 (24%)
Query: 5 RYGNLYQLLGTTITGDVAVGISGRDPMASTRLWHMRLGHMSEKGLSLMCGKGLLKDMKKP 64
+ NLY L GTTI G+VA +T LWHMRLGHMSE GL+ + +GLL
Sbjct: 404 KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIS 463
Query: 65 CMEFCEHCVFGKAHRVTFSTSKHMSKEILDYVHTDVRGPAKLASKGGSKYFVTFVDDHSR 124
++FCEHC+FGK RV F+TS H ++ ILDYVH+D+ GPA+ S GG++Y +T VDD+SR
Sbjct: 464 KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSR 523
Query: 125 FVWLYFLKHKNEVFNTFLVWKAMVENKTGRKLKTLRSNNGTE------------------ 166
VW YFLKHK + FN F WK MVE +T RK+K LR++NG E
Sbjct: 524 KVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRH 583
Query: 167 --SPHSSL---------------------DGGIPYEV-------------RSGEYA---- 186
PH+ + G+P + RS YA
Sbjct: 584 YTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYANKKT 643
Query: 187 ----------DYERLRVFGCTANYHVKGNKLDNRAQKAIFLGY 219
+Y L+VFGCTA HV KL+ RA K IFLGY
Sbjct: 644 PIEVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGY 686