BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0410.1
(248 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP38661.1 Retrovirus-related Pol polyprotein from transposon TN... 195 3e-54
KYP34377.1 Retrovirus-related Pol polyprotein from transposon TN... 185 4e-50
GAU16220.1 hypothetical protein TSUD_298520 [Trifolium subterran... 173 3e-46
>KYP38661.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 778
Score = 195 bits (495), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 125/186 (67%), Gaps = 13/186 (6%)
Query: 60 ASSQPDNDSSSGTPGHLMDQSQSPAPSSIDHAPTSLGTPPPDGPIHPSRPSHNRRPPTHL 119
++S P +D+S+ + QS S SS D + T PP + HP RRPP HL
Sbjct: 248 STSNPQDDNSTNS------QSLSEDASSNDISSTETSLPPTNHSQHP------RRPPHHL 295
Query: 120 IDYICHSYPDSNVVYPLTQYLNFEQFSGSHQVFLNSVITTVEPTSFSQAVKSPHWREAMS 179
DY+C+ + S +PL YL+ S SHQ FL ++I EP SFSQA+KS WREAM+
Sbjct: 296 KDYVCN-HIKSITNFPLANYLSLSNLSNSHQAFLTNIIDNQEPKSFSQAMKSAEWREAMA 354
Query: 180 KEIAALESNNTWTITDLPSGKRAIGCKWVYKIKFKPDGSIECYKARLVAKGYTQIEGLDF 239
KEI ALESNNTW++ LP GK +IGCKWVYKIK++ DGSIE YKARLVAKGY QIEG+D+
Sbjct: 355 KEIQALESNNTWSLCPLPQGKSSIGCKWVYKIKYRSDGSIERYKARLVAKGYAQIEGIDY 414
Query: 240 HDTFAP 245
HDTFAP
Sbjct: 415 HDTFAP 420
>KYP34377.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 938
Score = 185 bits (469), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 100/186 (53%), Positives = 124/186 (66%), Gaps = 13/186 (6%)
Query: 60 ASSQPDNDSSSGTPGHLMDQSQSPAPSSIDHAPTSLGTPPPDGPIHPSRPSHNRRPPTHL 119
++S P +D+S+ + D + PS TSL PP + H RP RRPP HL
Sbjct: 534 STSNPQDDNSTNSQSLSEDAPSNDIPS----VETSL--PPTN---HSQRP---RRPPHHL 581
Query: 120 IDYICHSYPDSNVVYPLTQYLNFEQFSGSHQVFLNSVITTVEPTSFSQAVKSPHWREAMS 179
DY+C+ + S +PL YL+ S HQ FL ++I EP SFSQA+KS WREAM+
Sbjct: 582 KDYVCN-HIKSTTNFPLANYLSLSNLSNFHQPFLTNIIGNQEPKSFSQAMKSAEWREAMA 640
Query: 180 KEIAALESNNTWTITDLPSGKRAIGCKWVYKIKFKPDGSIECYKARLVAKGYTQIEGLDF 239
KEI ALESNNTW++ LP GK +IGCKWVYKIK++ DGSIE YKA LVAKGYTQIEG+D+
Sbjct: 641 KEIQALESNNTWSLCPLPQGKSSIGCKWVYKIKYRSDGSIERYKACLVAKGYTQIEGIDY 700
Query: 240 HDTFAP 245
HDTFAP
Sbjct: 701 HDTFAP 706
>GAU16220.1 hypothetical protein TSUD_298520 [Trifolium subterraneum]
Length = 801
Score = 173 bits (439), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 3/161 (1%)
Query: 88 IDHAPTSLGTPPPDGPIHPSR--PSHNRRPPTHLIDYICH-SYPDSNVVYPLTQYLNFEQ 144
+DH +L PP P R P R P L DY+ ++ S + +PL Y +
Sbjct: 312 LDHPSKTLQENPPTEMNPPDRRYPQRIRTPSIRLTDYVNQINHVTSKINFPLENYFSLSN 371
Query: 145 FSGSHQVFLNSVITTVEPTSFSQAVKSPHWREAMSKEIAALESNNTWTITDLPSGKRAIG 204
S SH+ FL ++I EP S+SQ ++S WREAM+KEI ALESNNTW + LP GK AIG
Sbjct: 372 LSSSHRAFLINIIDNKEPKSYSQVIQSTEWREAMAKEIQALESNNTWVLCPLPEGKSAIG 431
Query: 205 CKWVYKIKFKPDGSIECYKARLVAKGYTQIEGLDFHDTFAP 245
CKWVYKIK+ DG+IE YKARLVAKGYTQ++G+D+HDTFAP
Sbjct: 432 CKWVYKIKYHSDGTIERYKARLVAKGYTQVQGIDYHDTFAP 472