BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0440.1
(263 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KZV32174.1 retrovirus-related Pol polyprotein from transposon TN... 220 9e-64
KYP60991.1 Retrovirus-related Pol polyprotein from transposon TN... 218 1e-63
CAN72676.1 hypothetical protein VITISV_020406 [Vitis vinifera] 224 1e-63
>KZV32174.1 retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dorcoceras hygrometricum]
Length = 699
Score = 220 bits (561), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 162/271 (59%), Gaps = 31/271 (11%)
Query: 3 YCKEKGIKRELTIRYSPQQNGVAERKNRTIAEIARSMLKGKGLPNNLWAEAENTSVFLLN 62
YC++ GI +ELT Y+P+QNGVAERKNRTI E+ARSMLK KGLP N WAEA T+V+L+N
Sbjct: 431 YCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLIN 490
Query: 63 WSPTKAIQNITPYEAWHGKKPRVDFFKIFGCLAYSHI-PFRKENFDEKGEKFIFIGYSNE 121
SPTKA+ N TPYEAW GK+P V+ KIFGC+ Y I + +EK K IFIGY ++
Sbjct: 491 LSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQ 550
Query: 122 SKGYRLLDPISYKLVISRDVIFYEIKSWEWGESSSQIVNKSDFFQINDCQED---QSSPS 178
SK YR+ +P + K+++SR+ +F E SW+W ++ K+ FQ D + ++
Sbjct: 551 SKAYRVYNPATGKVIVSRNTVFNEEDSWQWEDN-----RKAPAFQFEDDNRETRRMTTSE 605
Query: 179 SNLSEMPQISENGGVENSPNFD---------------------EDYSDSESPPRKTRSLN 217
SN S P S N +SP ++ DSE+PPRK RSL
Sbjct: 606 SNSSLSPDGS-NSVSRSSPTISTHQGSSSNSFNSGACSAEGDTDNDGDSETPPRKVRSLR 664
Query: 218 DIYESCGFSFFTYEPQNFKEAEKEEVWRNAM 248
+IYESC + + +P ++EA + W+ AM
Sbjct: 665 EIYESCTLALYASDPSTYEEAAERSEWKLAM 695
>KYP60991.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 612
Score = 218 bits (556), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/256 (46%), Positives = 166/256 (64%), Gaps = 11/256 (4%)
Query: 3 YCKEKGIKRELTIRYSPQQNGVAERKNRTIAEIARSMLKGKGLPNNLWAEAENTSVFLLN 62
+C+++GI+R+LT+ Y+PQQNGV+ERKNRT+ E+ARSMLK KGLPN WAEA T+V+LLN
Sbjct: 51 FCEDEGIERQLTVAYTPQQNGVSERKNRTVMEMARSMLKEKGLPNTFWAEAVYTAVYLLN 110
Query: 63 WSPTKAIQNITPYEAWHGKKPRVDFFKIFGCLAYSHIPFRKEN-FDEKGEKFIFIGYSNE 121
PTKA+++ TP EAW GKKP ++FG + Y H+P K + ++K + IF+GYS++
Sbjct: 111 RCPTKAVRDKTPIEAWSGKKPSAKHLRVFGSICYIHVPDEKRHKLEDKTVRGIFLGYSSQ 170
Query: 122 SKGYRLLDPISYKLVISRDVIFYEIKSWEWGESSSQIVNKSDFFQINDCQEDQSSPSSNL 181
SKGYR+ + + KL ISRD+ E +W W E +I K+ + IN Q SS N
Sbjct: 171 SKGYRVYNLQTKKLTISRDIEVDENATWNWEE--ERIEKKTIYMPIN--QPTTSSLEDNN 226
Query: 182 SEMPQISENGGVENSPNFDEDYSDSESPPRKTRSLNDIYESCGFSFFTYEPQNFKEAEKE 241
++ E+ + P +E S ES PR+ RSL DIYE+C + EP +F+EA +
Sbjct: 227 QDIVISPESPRI--VPQQEE--SSPESTPRRVRSLVDIYETCNLAIL--EPGSFEEAANQ 280
Query: 242 EVWRNAMNEELTTIEK 257
EVW AM EE+ IEK
Sbjct: 281 EVWVKAMEEEIKMIEK 296
>CAN72676.1 hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 224 bits (572), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/260 (47%), Positives = 166/260 (63%), Gaps = 11/260 (4%)
Query: 3 YCKEKGIKRELTIRYSPQQNGVAERKNRTIAEIARSMLKGKGLPNNLWAEAENTSVFLLN 62
+C+E+G+ RELT YSP+QNGVAERKNRT+ E+ARSM+K K L N+ WAE T+V+LLN
Sbjct: 514 FCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEGVATAVYLLN 573
Query: 63 WSPTKAIQNITPYEAWHGKKPRVDFFKIFGCLAYSHI-PFRKENFDEKGEKFIFIGYSNE 121
SPTKA+ N TPYEAW+GKKP V K+FG +AY+ I + DEK K IFIGY ++
Sbjct: 574 ISPTKAVLNRTPYEAWYGKKPWVSHLKVFGSVAYTLIESHNRSKLDEKSVKCIFIGYCSQ 633
Query: 122 SKGYRLLDPISYKLVISRDVIFYEIKSWEWGESSS----QIVNKSDFFQINDCQEDQSSP 177
SKGY+L +P+S K+++SR+V+F E SW W S +I ++S+ Q D Q P
Sbjct: 634 SKGYKLYNPVSGKIIVSRNVVFDEKASWTWRVSEDGALVEISSESEVAQSEDQQ-----P 688
Query: 178 SSNLSEMPQISENGGVENSPNFDEDYSDSESPPRKTRSLNDIYESCGFSFFTYEPQNFKE 237
S + P S + N + S E+PPRK RSL DIYE+ F +P F+E
Sbjct: 689 SVQIPASPTPSHSPSSPNLSSSSSSQSSEETPPRKFRSLRDIYETTQV-LFVADPTTFEE 747
Query: 238 AEKEEVWRNAMNEELTTIEK 257
A ++E W +AM EE+ IEK
Sbjct: 748 AVEKEEWXSAMKEEIAAIEK 767