BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g0490.1
(208 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010675350.1 PREDICTED: uncharacterized protein LOC104891365 [... 210 3e-64
KYP56111.1 Retrovirus-related Pol polyprotein from transposon TN... 174 1e-50
KYP76948.1 Retrovirus-related Pol polyprotein from transposon TN... 175 1e-49
>XP_010675350.1 PREDICTED: uncharacterized protein LOC104891365 [Beta vulgaris
subsp. vulgaris]
Length = 326
Score = 210 bits (534), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 128/189 (67%), Gaps = 1/189 (0%)
Query: 1 MTGNRELFVELEKNVSTQVKLDDGKLKPAGGKGVIAV-ATNKGDKFIHDVLYVPGITQNL 59
MTGN+ FV L++N+ TQ+ L DG + GKG I V A N KFIH V YVP + QNL
Sbjct: 138 MTGNKNSFVSLDENIKTQITLGDGSNQELAGKGTIVVRARNDSSKFIHKVFYVPRLAQNL 197
Query: 60 LSVGQLMRKNYSLRFDNGECEIVDKRTNLIVATVQMTSNNVFYLIMPKCDNVSFKSEVDM 119
LSVGQLM+++Y ++FD +C I DKR ++ QM +F L M NV+ S VD
Sbjct: 198 LSVGQLMQRSYMVKFDANKCLIFDKRKGQLITNTQMAPTKIFPLRMQLEHNVALSSMVDE 257
Query: 120 AHIWHLRYGHLNYRGLKLLKEKDMVVDLPYISKNDEICEGCIYEKMHRLPFPKVSSRARA 179
+ +WHLR+GHLN+ LKLLK K+MV LP IS +ICEGCIY +MHRLPFP S RARA
Sbjct: 258 SILWHLRFGHLNFNSLKLLKRKEMVTGLPPISNERKICEGCIYGEMHRLPFPTSSWRARA 317
Query: 180 PLELVHADI 188
PLELVHAD+
Sbjct: 318 PLELVHADL 326
>KYP56111.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 271
Score = 174 bits (440), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 129/208 (62%), Gaps = 3/208 (1%)
Query: 1 MTGNRELFVELEKNVSTQVKLDDGKLKPAGGKGVIAVATNKGDKFIHDVLYVPGITQNLL 60
M ++ +F +++K+V +V+L +G + + GK + V T KG + I D+L VP + +NLL
Sbjct: 1 MAKDQSIFKDIDKSVKVKVRLGNGTMVESQGKNTVMVETKKGTRLIKDMLLVPNLKENLL 60
Query: 61 SVGQLMRKNYSLRFDNGECEIVDKRTNLIVATVQMTSNNV-FYLIMPKCDNVSFKSEVDM 119
S+GQ+M YSL F+ C+I D + L + V+M N+ F L + N++ K EVD
Sbjct: 61 SIGQMMENGYSLHFERDICKIYDNK-RLEIDQVKMEKRNISFPLSFNRGTNIAMKVEVDD 119
Query: 120 AHIWHLRYGHLNYRGLKLLKEKDMVVDLPYISKNDEICEGCIYEKMHRLPFPKVSS-RAR 178
+ WH R+GH N LKLL +K M+ DLP + +N E CEGC+ K HRLPF ++ RA+
Sbjct: 120 SLFWHRRFGHFNIHALKLLYQKGMMRDLPSLKENIEACEGCLLGKQHRLPFSSSNAWRAK 179
Query: 179 APLELVHADIFGPTKTPSLSNKRYFFLL 206
LEL+H D+ GP +TPS +N RYF L
Sbjct: 180 DLLELIHTDVCGPMRTPSHTNNRYFILF 207
>KYP76948.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 422
Score = 175 bits (444), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 129/208 (62%), Gaps = 3/208 (1%)
Query: 1 MTGNRELFVELEKNVSTQVKLDDGKLKPAGGKGVIAVATNKGDKFIHDVLYVPGITQNLL 60
M ++ +F +++ +V +V+L +G + + GKG + V T KG + I DVL VP + +NLL
Sbjct: 188 MAKDQSIFKDIDNSVKVKVRLGNGTMVESQGKGTVVVETKKGTRLIKDVLLVPNLKENLL 247
Query: 61 SVGQLMRKNYSLRFDNGECEIVDKRTNLIVATVQMTSNNVFYLIMPKC-DNVSFKSEVDM 119
S+GQ+M YSL F+ C+I D + + + V+M N + + C N++ K EVD
Sbjct: 248 SIGQMMENGYSLHFERDICKIYDSK-RVEIGQVKMEKRNRSFPLSFNCGTNLAMKVEVDD 306
Query: 120 AHIWHLRYGHLNYRGLKLLKEKDMVVDLPYISKNDEICEGCIYEKMHRLPFPKVSS-RAR 178
+ +WH R+GH N LKLL +K M+ DLP + +N+E CEGC+ K HRLPF + RA+
Sbjct: 307 SWLWHRRFGHFNIHALKLLHQKGMMRDLPNLKENNEACEGCLLGKQHRLPFSTSKAWRAK 366
Query: 179 APLELVHADIFGPTKTPSLSNKRYFFLL 206
LEL+H D+ GP +TPS +N RYF L
Sbjct: 367 DLLELIHTDVCGPMRTPSHTNNRYFILF 394