BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000118.1_g1490.1
(148 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CDY50318.1 BnaCnng19010D [Brassica napus] 112 5e-26
XP_013671210.1 PREDICTED: PHD finger protein MALE MEIOCYTE DEATH... 111 6e-26
XP_013616138.1 PREDICTED: PHD finger protein MALE MEIOCYTE DEATH... 111 6e-26
>CDY50318.1 BnaCnng19010D [Brassica napus]
Length = 625
Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 18/145 (12%)
Query: 9 PTPLGGSFVENMEVFMETFCKVEDDSV-------TLLIPDKE---IKIFVVVQDMEIVLI 58
P GSF +N+ VF+ F +VED +V TLL + + I ++ + +D +V
Sbjct: 30 PISRSGSFRDNVRVFLRDFAEVEDYNVRGSPVWCTLLSREAKNTVIPLYTIEED--VVRS 87
Query: 59 QEPDEYFCENCIHIGWGHHLVSKRIYHFVIPADDEWQP--NKSPLDLDTHLLHGSIHSNG 116
EP +C++C GW +H VSKR YHF+IP D EW DL THLLHG IH+NG
Sbjct: 88 SEP---YCDHCRCTGWSNHFVSKRKYHFIIPVDAEWDLPLEDDVFDLQTHLLHGLIHTNG 144
Query: 117 FGHLLCINGLEGGSGRVWCSLKAVE 141
FGHL+C+NGLEGGS R C + V+
Sbjct: 145 FGHLICVNGLEGGS-RYLCGREMVD 168
>XP_013671210.1 PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1-like [Brassica
napus]
Length = 719
Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 18/145 (12%)
Query: 9 PTPLGGSFVENMEVFMETFCKVEDDSV-------TLLIPDKE---IKIFVVVQDMEIVLI 58
P GSF +N+ VF+ F +VED +V TLL + + I ++ + +D +V
Sbjct: 30 PISRSGSFRDNVRVFLRDFAEVEDYNVRGSPVWCTLLSREAKNTVIPLYTIEED--VVRS 87
Query: 59 QEPDEYFCENCIHIGWGHHLVSKRIYHFVIPADDEWQP--NKSPLDLDTHLLHGSIHSNG 116
EP +C++C GW +H VSKR YHF+IP D EW DL THLLHG IH+NG
Sbjct: 88 SEP---YCDHCRCTGWSNHFVSKRKYHFIIPVDAEWDLPLEDDVFDLQTHLLHGLIHTNG 144
Query: 117 FGHLLCINGLEGGSGRVWCSLKAVE 141
FGHL+C+NGLEGGS R C + V+
Sbjct: 145 FGHLICVNGLEGGS-RYLCGREMVD 168
>XP_013616138.1 PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Brassica
oleracea var. oleracea]
Length = 719
Score = 111 bits (278), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 18/145 (12%)
Query: 9 PTPLGGSFVENMEVFMETFCKVEDDSV-------TLLIPDKE---IKIFVVVQDMEIVLI 58
P GSF +N+ VF+ F +VED +V TLL + + I ++ + +D +V
Sbjct: 30 PISRSGSFRDNVRVFLRDFAEVEDYNVRGSPVWCTLLSREAKNTVIPLYTIEED--VVRS 87
Query: 59 QEPDEYFCENCIHIGWGHHLVSKRIYHFVIPADDEWQP--NKSPLDLDTHLLHGSIHSNG 116
EP +C++C GW +H VSKR YHF+IP D EW DL THLLHG IH+NG
Sbjct: 88 SEP---YCDHCRCTGWSNHFVSKRKYHFIIPVDAEWDLPLEDDVFDLQTHLLHGLIHTNG 144
Query: 117 FGHLLCINGLEGGSGRVWCSLKAVE 141
FGHL+C+NGLEGGS R C + V+
Sbjct: 145 FGHLICVNGLEGGS-RYLCGREMVD 168