BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0430.1
(518 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BAA22288.1 polyprotein [Oryza australiensis] 833 0.0
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 808 0.0
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 816 0.0
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/516 (75%), Positives = 449/516 (87%)
Query: 1 MTSPDSEKWLGAMKSEMESMSENQVWNLVDLPDGVKPIGCKWIFKMKTDKDGNVSVFKAR 60
M DS KWLGAMKSE+ESM +NQVWNLVD PDGVK I CKW+FK K D DGNV ++KAR
Sbjct: 802 MVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKAR 861
Query: 61 LVAKGYRQVQDIDYEETFSPVAMLKSIRIILAIAAHYDYDIWQMDVKTAFLNGKLEEDVY 120
LVAKG++Q+Q +DY+ETFSPVAMLKSIRIILAIAA++DY+IWQMDVKTAFLNG L EDVY
Sbjct: 862 LVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVY 921
Query: 121 MTQPEGFEDSENAGKVCKLQRSIYGLKQASRSWNLRFDEKIKEFGFLKNEEESCVYKKVS 180
M QP+GF D E+ GK+CKLQ+SIYGLKQASRSWN+RFDE IK FGF+KNEEE+CVYKKVS
Sbjct: 922 MIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVS 981
Query: 181 GSNLVFLVLYVDDILIVGNDIPMLDSVKEWLRKCFSMKDLGDAEYILGIKIYRDRSRRMI 240
GS +VFL+LYVDDIL++GNDIPML+SVK L+ FSMKDLG+A YILGI+IYRDRS+R+I
Sbjct: 982 GSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLI 1041
Query: 241 GLSQETYIDKVLGRFKMEDSKRGFLPMTHGTTLSKTQCPRNPDELAHMKKVPYASAIGSI 300
GLSQ TYIDKVL RF M DSK+GFLPM+HG LSK QCP+ DE M VPYASAIGSI
Sbjct: 1042 GLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSI 1101
Query: 301 MYAMVCTRPDVSYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDHFLVYGGKDELIAEG 360
MYAM+CTRPDVSYALS SRYQS+PGE HWTA KNILKYLRRTKD FLVYGG+++L+ G
Sbjct: 1102 MYAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSG 1161
Query: 361 HVDASFQTDRDDFQSQSGYVFCLNGGAVSWKSSKQTTVADSTTEAEYLAASEAAKEGVWI 420
+ DASFQTD+DD++SQSG+VFCLNGGAVSWKSSKQ TVADSTTEAEY+AASEAAKE VWI
Sbjct: 1162 YTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWI 1221
Query: 421 KKFISEFGVVPSIENGVTLYCDNNGAIAQAKELRAHQKSKHILRKYHVIREITERKDVVI 480
KKF+SE GV+ S ++LYCDN+GAIAQAKE R+HQKSKHILR+YH+IREI +R DV I
Sbjct: 1222 KKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKI 1281
Query: 481 CKVDTDDNVADPLTKPLPQPKYESHRRGIGIKRIDE 516
CKV TD N+ADPLTKPLPQPK+E+H R +GI+ + +
Sbjct: 1282 CKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRYLHD 1317
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/514 (74%), Positives = 434/514 (84%)
Query: 1 MTSPDSEKWLGAMKSEMESMSENQVWNLVDLPDGVKPIGCKWIFKMKTDKDGNVSVFKAR 60
+ PDS+KWL A KSEMESMS+N+VW LVDLPDGVKPI CKWIFK K D DGN+ ++KA
Sbjct: 449 LMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAG 508
Query: 61 LVAKGYRQVQDIDYEETFSPVAMLKSIRIILAIAAHYDYDIWQMDVKTAFLNGKLEEDVY 120
LVAKGY+QV IDY+ET+SPVAMLKSIRI+LA AAHYDY+IWQMDVKTAFLNG LEE VY
Sbjct: 509 LVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVY 568
Query: 121 MTQPEGFEDSENAGKVCKLQRSIYGLKQASRSWNLRFDEKIKEFGFLKNEEESCVYKKVS 180
MTQPEGF E A KVCKL RSIYGLKQASRSWNLRF+E IKEF F++NEEE CVYKK S
Sbjct: 569 MTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTS 628
Query: 181 GSNLVFLVLYVDDILIVGNDIPMLDSVKEWLRKCFSMKDLGDAEYILGIKIYRDRSRRMI 240
GS + FLVLYVDDIL++GNDIP+L SVK WL CFSMKD+G+A YILGI+IYRDR ++I
Sbjct: 629 GSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKII 688
Query: 241 GLSQETYIDKVLGRFKMEDSKRGFLPMTHGTTLSKTQCPRNPDELAHMKKVPYASAIGSI 300
GLSQ+TYIDKVL RF M DSK+GF+PM+HG TLSKTQCP DE M K+PYASAIGSI
Sbjct: 689 GLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSI 748
Query: 301 MYAMVCTRPDVSYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDHFLVYGGKDELIAEG 360
MYAM+ TRPDV+ ALSM SRYQS+PGE HW +NI KYLRRTKD FLVYGG +EL+ G
Sbjct: 749 MYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSG 808
Query: 361 HVDASFQTDRDDFQSQSGYVFCLNGGAVSWKSSKQTTVADSTTEAEYLAASEAAKEGVWI 420
+ DASFQTD+DDF+SQSG+ FCLNGGAVSWKS+KQ+TVADSTTEAEY+AASEAAKE VWI
Sbjct: 809 YTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWI 868
Query: 421 KKFISEFGVVPSIENGVTLYCDNNGAIAQAKELRAHQKSKHILRKYHVIREITERKDVVI 480
+KFI+E GVVPSI + LYCDNNGAIAQAKE ++HQKSKHI R+YH+IREI +R DV I
Sbjct: 869 RKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKI 928
Query: 481 CKVDTDDNVADPLTKPLPQPKYESHRRGIGIKRI 514
+V TD NVAD TKPLPQPK+ESH IGI+ I
Sbjct: 929 SRVSTDANVADHFTKPLPQPKHESHTTAIGIRFI 962
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/516 (74%), Positives = 446/516 (86%)
Query: 1 MTSPDSEKWLGAMKSEMESMSENQVWNLVDLPDGVKPIGCKWIFKMKTDKDGNVSVFKAR 60
M PDSEKWLGAMKSE++SM +NQVWNLVD DGVK I CKWI+K K D DGNV + KAR
Sbjct: 798 MMDPDSEKWLGAMKSEIDSMRDNQVWNLVDPLDGVKTIECKWIYKKKIDMDGNVHIHKAR 857
Query: 61 LVAKGYRQVQDIDYEETFSPVAMLKSIRIILAIAAHYDYDIWQMDVKTAFLNGKLEEDVY 120
LVAKG+RQVQ +DY+ETFS VAMLKSIRIILAIAA++DY+IWQMDVKTAFLNGKL EDVY
Sbjct: 858 LVAKGFRQVQGVDYDETFSLVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVY 917
Query: 121 MTQPEGFEDSENAGKVCKLQRSIYGLKQASRSWNLRFDEKIKEFGFLKNEEESCVYKKVS 180
MTQPEGF D NA KVCKLQ+SIYGLKQASRSWN+RFDE+IK FGF+KN+EE CVY KVS
Sbjct: 918 MTQPEGFVDPNNASKVCKLQKSIYGLKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVS 977
Query: 181 GSNLVFLVLYVDDILIVGNDIPMLDSVKEWLRKCFSMKDLGDAEYILGIKIYRDRSRRMI 240
GS LV L+LYVDDIL++GNDIPML+SVK L+ FSMKDLG+A YILGIKIYRDRSRR+I
Sbjct: 978 GSTLVILILYVDDILLIGNDIPMLESVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLI 1037
Query: 241 GLSQETYIDKVLGRFKMEDSKRGFLPMTHGTTLSKTQCPRNPDELAHMKKVPYASAIGSI 300
GLSQ TYIDKVL RF M+++K+GFLPM+HG + SK+Q P DE M +PYASAIGSI
Sbjct: 1038 GLSQSTYIDKVLIRFNMQNTKKGFLPMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSI 1097
Query: 301 MYAMVCTRPDVSYALSMCSRYQSNPGEKHWTAAKNILKYLRRTKDHFLVYGGKDELIAEG 360
MYAM+CTR DVSYALS+ SRYQ++PGE HWTA KNILKYLRRTKD FL+YGG +EL+ G
Sbjct: 1098 MYAMICTRQDVSYALSVTSRYQADPGECHWTAVKNILKYLRRTKDAFLIYGGDEELVVNG 1157
Query: 361 HVDASFQTDRDDFQSQSGYVFCLNGGAVSWKSSKQTTVADSTTEAEYLAASEAAKEGVWI 420
+ DASFQTD+DD++SQSG+VF LNGGAVSWKSSKQ TVADSTT+AEY+AASEAAKEGVWI
Sbjct: 1158 YTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWI 1217
Query: 421 KKFISEFGVVPSIENGVTLYCDNNGAIAQAKELRAHQKSKHILRKYHVIREITERKDVVI 480
+ FI+E GVVPS + + LYCDNNGAIAQAKE R+HQKSKHILR+YH+IRE+ +R DV I
Sbjct: 1218 RNFIAELGVVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKI 1277
Query: 481 CKVDTDDNVADPLTKPLPQPKYESHRRGIGIKRIDE 516
CK+ TD NVADPLTKPL QPK+E+H R IGI+ +++
Sbjct: 1278 CKIHTDLNVADPLTKPLTQPKHEAHTRAIGIRYLND 1313