BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g0440.1
(538 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 591 0.0
BAA22288.1 polyprotein [Oryza australiensis] 584 0.0
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 561 0.0
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 591 bits (1524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 272/384 (70%), Positives = 319/384 (83%)
Query: 89 LILVLRNCYYVPTISRNIISASVLDKEGYHAIIKDKSCSLYKGEMFYTSAKLRNGLYVVN 148
++L L+NCYYVP I++NIIS S LD EG+H IK+K CS + +MFY SA L NGL+V+N
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLN 60
Query: 149 IEDEILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHADGLLGSCDLESYDTCEPCL 208
I NI TK+ +++D N ++LWHCRLGHIN K +QKLH+DGLL S D ESY+TCE CL
Sbjct: 61 QSMPIYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCL 120
Query: 209 VGKMTRSSFKGKGDRVSEPLELIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMRH 268
+GKMT++ F G +R S+ L LIHTDVCGPMST ARGNY YFITFTDDF+RYGYVYLM+H
Sbjct: 121 LGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKH 180
Query: 269 KSESFEVFKQFQNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQM 328
KS+SFE FK+FQNEV+NQ GK IKA+RSDRGGEYLSQ F DHLR CGIVSQLTPPGTPQ
Sbjct: 181 KSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLTPPGTPQW 240
Query: 329 NGVSERRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRAPSKAVEKTPYEIWTGKV 388
NGVSERRNRTL+DMVRSMM+ DLP+ FWGYALET+AF LNR PSK+VEKTPYEIWTGKV
Sbjct: 241 NGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSVEKTPYEIWTGKV 300
Query: 389 PKLSFLKVWGCDVYVKRLQGDKLAPRSDKCLFIGYPKETKGYYFYNPSENKVFVARDGVF 448
P LSFLK+WGC+ Y KRL DKL P+SDKC F+GYPKETKGYYFY+P++NKVFV R+G F
Sbjct: 301 PNLSFLKIWGCESYAKRLITDKLGPKSDKCYFVGYPKETKGYYFYHPTDNKVFVVRNGAF 360
Query: 449 LEKEFLSKKTSGRNIEIEEVRSEQ 472
LE+EFLSK TSG + +EEVR Q
Sbjct: 361 LEREFLSKGTSGSKVLLEEVREPQ 384
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 584 bits (1506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 292/514 (56%), Positives = 359/514 (69%), Gaps = 42/514 (8%)
Query: 19 WEEDQRR-VPDASKKESVIELPEREVEVGAYVIEVNLADIADSPSWVYDTGCGAHIISEL 77
W+ + ++ + D KK+S G VI++NLA + + SWV+DTG AH L
Sbjct: 264 WKRNCKKYMEDLKKKQSTTSAS------GINVIDINLA-TSPTDSWVFDTGSVAHSCKSL 316
Query: 78 DELKE----------------------------VSLETGLILVLRNCYYVPTISRNIISA 109
++ + L +GL+L L NCY VPT+ +N+ISA
Sbjct: 317 QGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISA 376
Query: 110 SVLDKEGYHAIIKDKSCSLYKGEMFYTSAKLRNGLYVVNIE-DEILNIDTKRLRTHDSNQ 168
S L EGY + CS+Y +MFY A L NGLYV+N+E I NI+T+R ++D N
Sbjct: 377 SCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQLSNDINP 436
Query: 169 SYLWHCRLGHINMKRMQKLHADGLLGSCDLESYDTCEPCLVGKMTRSSFKGKGDRVSEPL 228
+++WHCRLGHIN KRM+KLH DGLL S D ES++TCE CL+GKMT++ F G +R S+ L
Sbjct: 437 TFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLL 496
Query: 229 ELIHTDVCGPMSTLARGNYGYFITFTDDFTRYGYVYLMRHKSESFEVFKQFQNEVENQLG 288
L+HTDVCGPMS+ ARG Y YFITFTDDF+RYGY+YLMRHKSESFE FK+FQNEV+N LG
Sbjct: 497 ALVHTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLG 556
Query: 289 KKIKAIRSDRGGEYLSQEFEDHLRSCGIVSQLTPPGTPQMNGVSERRNRTLMDMVRSMMN 348
K IK +RSDRGGEY+SQEF +HL+ CGIV QLTPPGTPQ NGVSERRNRTL+DMVRSMM+
Sbjct: 557 KTIKFLRSDRGGEYVSQEFGNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMS 616
Query: 349 LADLPNTFWGYALETAAFTLNRAPSKAVEKTPYEIWTGKVPKLSFLKVWGCDVYVKRLQG 408
+DLP +FWGYALETAA TLNR PSK+VEKTPYEIWTG+ P LSFLK+WGC+ YVKRLQ
Sbjct: 617 QSDLPLSFWGYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQS 676
Query: 409 DKLAPRSDKCLFIGYPKETKGYYFYNPSENKVFVARDGVFLEKEFLSKKTSGRNIEIEEV 468
DKL P+SDKC +GYPKETKGYYFYN + KVFVAR GVFLEKEFLS++ SG + +EEV
Sbjct: 677 DKLTPKSDKCFVVGYPKETKGYYFYNREQAKVFVARHGVFLEKEFLSRRVSGIRVHLEEV 736
Query: 469 RSEQQT--GTVVPMSE---VAIPNYYEPIEKERE 497
+ +T T P E VA P P + E
Sbjct: 737 QETPETVSATTEPQQEDQSVAPPVVDTPAPRRSE 770
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 561 bits (1446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 273/462 (59%), Positives = 330/462 (71%), Gaps = 30/462 (6%)
Query: 46 GAYVIEVNLADIADSPSWVYDTGCGAHIISELDELKE----------------------- 82
G VIE+NLA + + SWV+DTG AHI L LK
Sbjct: 262 GINVIEINLA-TSSTDSWVFDTGSVAHICKSLQGLKRSRSLARGEVDIRVGNGARVAAVA 320
Query: 83 -----VSLETGLILVLRNCYYVPTISRNIISASVLDKEGYHAIIKDKSCSLYKGEMFYTS 137
+SL + L+L L N Y +P + +N+ISAS L EGY D CS+Y ++FY
Sbjct: 321 VGTMPLSLPSRLVLELNNYYCIPALCKNVISASCLQAEGYGFRSVDNDCSVYYNDIFYFH 380
Query: 138 AKLRNGLYVVNIED-EILNIDTKRLRTHDSNQSYLWHCRLGHINMKRMQKLHADGLLGSC 196
A + +GLY+VN+ + NI+ KR R +D N +++WHCRLGHIN KRM+K+H DGLL S
Sbjct: 381 APMMSGLYIVNLNGYSVYNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSF 440
Query: 197 DLESYDTCEPCLVGKMTRSSFKGKGDRVSEPLELIHTDVCGPMSTLARGNYGYFITFTDD 256
D ES++TCE CL+GKMT++ F G+ +R SE L L+HTDVCGPMS+ ARG +GYF TFTDD
Sbjct: 441 DFESFETCESCLLGKMTKAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDD 500
Query: 257 FTRYGYVYLMRHKSESFEVFKQFQNEVENQLGKKIKAIRSDRGGEYLSQEFEDHLRSCGI 316
F+RYGYVYLMRHKSESFE FK+F NEV+N LGK IK +RSDRGGEYLS EF +HL+ CGI
Sbjct: 501 FSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFGNHLKECGI 560
Query: 317 VSQLTPPGTPQMNGVSERRNRTLMDMVRSMMNLADLPNTFWGYALETAAFTLNRAPSKAV 376
V QLTPPGTPQ NGVSE RNRTL+DMVRSMM+ +L +FWGYALET AFTLN PSK+V
Sbjct: 561 VPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSV 620
Query: 377 EKTPYEIWTGKVPKLSFLKVWGCDVYVKRLQGDKLAPRSDKCLFIGYPKETKGYYFYNPS 436
+KTPYEIWTGK P LSFLK+WGC+VYVKRLQ DKL P+SDKC F+GYPKETKGYYFYN
Sbjct: 621 DKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQSDKLTPKSDKCFFVGYPKETKGYYFYNQE 680
Query: 437 ENKVFVARDGVFLEKEFLSKKTSGRNIEIEEVRSEQQTGTVV 478
E KVFVAR GVFLEKEF+S+K G + R + + T V
Sbjct: 681 EGKVFVARHGVFLEKEFISRKDIGSMLWKHRFREDPKKKTDV 722