BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1300.1
(167 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010242492.1 PREDICTED: DNA-directed RNA polymerase II subunit... 332 e-115
OAY62631.1 DNA-directed RNA polymerase II subunit RPB7 [Ananas c... 327 e-113
XP_003568492.1 PREDICTED: DNA-directed RNA polymerase II subunit... 326 e-113
>XP_010242492.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nelumbo
nucifera] XP_010242493.1 PREDICTED: DNA-directed RNA
polymerase II subunit RPB7 [Nelumbo nucifera]
XP_010242494.1 PREDICTED: DNA-directed RNA polymerase II
subunit RPB7 [Nelumbo nucifera]
Length = 177
Score = 332 bits (851), Expect = e-115, Method: Compositional matrix adjust.
Identities = 162/167 (97%), Positives = 166/167 (99%)
Query: 1 MQLHPRHFGPNLRDKLVAKLMKDVEGTCSGLHGFVVAITGVDSIGKGLIRDGTGFVTFPV 60
MQLHPRHFGPNLRDKLVAKLMKDVEGTCSG HGFVVAITGVD+IGKGLIRDGTGFVTFPV
Sbjct: 11 MQLHPRHFGPNLRDKLVAKLMKDVEGTCSGRHGFVVAITGVDNIGKGLIRDGTGFVTFPV 70
Query: 61 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTS 120
KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTS 130
Query: 121 DGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAS 167
DGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA+
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAA 177
>OAY62631.1 DNA-directed RNA polymerase II subunit RPB7 [Ananas comosus]
Length = 177
Score = 327 bits (839), Expect = e-113, Method: Compositional matrix adjust.
Identities = 159/167 (95%), Positives = 165/167 (98%)
Query: 1 MQLHPRHFGPNLRDKLVAKLMKDVEGTCSGLHGFVVAITGVDSIGKGLIRDGTGFVTFPV 60
MQLHPRHFGP+LRDKLV+KLMKDVEGTCSG HGFVVAITGV+ IGKGLIR+GTGFVTFPV
Sbjct: 11 MQLHPRHFGPHLRDKLVSKLMKDVEGTCSGRHGFVVAITGVEEIGKGLIREGTGFVTFPV 70
Query: 61 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTS 120
KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTS 130
Query: 121 DGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAS 167
DGSVKIQK+SEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAS
Sbjct: 131 DGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAS 177
>XP_003568492.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB7
[Brachypodium distachyon] KQK06355.1 hypothetical
protein BRADI_2g25940 [Brachypodium distachyon]
Length = 177
Score = 326 bits (836), Expect = e-113, Method: Compositional matrix adjust.
Identities = 159/166 (95%), Positives = 164/166 (98%)
Query: 1 MQLHPRHFGPNLRDKLVAKLMKDVEGTCSGLHGFVVAITGVDSIGKGLIRDGTGFVTFPV 60
MQLHPRHFGP+LRDKLVAKLMKDVEGTCSG HGFVVAITGV+ IGKGLIR+GTGFVTFPV
Sbjct: 11 MQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIREGTGFVTFPV 70
Query: 61 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDIPNYTTS 120
KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGD+PNYTTS
Sbjct: 71 KYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTS 130
Query: 121 DGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAA 166
DGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA
Sbjct: 131 DGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176