BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1430.1
(500 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP53356.1 Retrovirus-related Pol polyprotein from transposon TN... 665 0.0
ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 cop... 684 0.0
KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN... 664 0.0
>KYP53356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/500 (63%), Positives = 389/500 (77%), Gaps = 3/500 (0%)
Query: 1 MQEEMESLHKNKTWEVVLLPEGKSVIGCKWVYKKKEDSSEIKGTRYKARLVAKGYAQKEG 60
M EE+ESLHKN TW + LP+GK + CKW+YKKK+ ++ R KARLV KG+ QKEG
Sbjct: 1 MNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEG 60
Query: 61 VDYNEIFSPVVKHTSIRVLLSIVAHRDLELEQLDVKTAFLHGVLEEEIYMAQPEGYKVEG 120
+D+NEIFSPVV+HTSIR+LL+ VA DLELEQLDVKTAFLHG LEEEIYM QPEG+ V
Sbjct: 61 IDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPS 120
Query: 121 KENQVCRLRKSLYGLKQFPRQWYKRFDFFMLKHGFPRSDYDCCVYIKKLREGDFIYLLLY 180
KE+ VC+L+KSLYGLKQ PRQWYK+FD FM+ G+ RS YD C+Y ++ +G FIYLLLY
Sbjct: 121 KEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLY 180
Query: 181 VDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKLYLNQKGYIER 240
VDDMLIASR I+KLK+QL+ EFEMK++GAAKKILGMEI R+R KL+L+Q+ YIER
Sbjct: 181 VDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIER 240
Query: 241 VVSRFGMQNAKAVSTPLAPHFRLSDKQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPD 300
++ RF M N K VSTPLA HF+LS P T E + M VPYASAVGSLMYAMVCTRPD
Sbjct: 241 LLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPD 300
Query: 301 ISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFG---GDTCQVSGYVDSDYAG 357
++ AVS+VSR+M NPGK HW AVKW+ RYLKGT + GL F T V+G+VDSDY G
Sbjct: 301 LAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGG 360
Query: 358 DLDRRRSTTGYVFRVHGALVSWRSMLQSTVALSTTEAEYMAMAEGVKEALWLWGLLDDLG 417
DLDRRRS +GY+F + + +SW++ LQS ALSTTEAEY++ EGVKEALW+ GL+ +LG
Sbjct: 361 DLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELG 420
Query: 418 IKQECVDVWCDSQSAIHLAKNQIHHARIKHIDVRYHFVRDVIEEGDVSLMKVHTDENPAD 477
+ Q+ + V+CDSQSAIHL KN +H + KHIDV++HF+RD++ G+V L KVHT ENPAD
Sbjct: 421 LTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPAD 480
Query: 478 MLTKVVTCSKFQHCLELLQI 497
MLTK + +KFQHCL L+ +
Sbjct: 481 MLTKPLPNAKFQHCLGLVGL 500
>ABO36622.1 copia LTR rider [Solanum lycopersicum] ABO36636.1 copia LTR rider
[Solanum lycopersicum]
Length = 1307
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/501 (64%), Positives = 401/501 (80%), Gaps = 4/501 (0%)
Query: 1 MQEEMESLHKNKTWEVVLLPEGKSVIGCKWVYKKKEDSSEIKGTRYKARLVAKGYAQKEG 60
M +EMESLHKN+TW++V+ P G+ +I CKWV+KKKE S +G +YKAR+VA+G+ Q+EG
Sbjct: 810 MGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREG 869
Query: 61 VDYNEIFSPVVKHTSIRVLLSIVAHRDLELEQLDVKTAFLHGVLEEEIYMAQPEGYKVEG 120
VDYNEIFSPVV+HTSIRVLL+IVAH++LELEQLDVKTAFLHG LEEEIYM QP+G++V G
Sbjct: 870 VDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPG 929
Query: 121 KENQVCRLRKSLYGLKQFPRQWYKRFDFFMLKHGFPRSDYDCCVYIKKLREGDFIYLLLY 180
KEN VC+L+KSLYGLKQ PRQWYKRFD +M+K G+ RS YDCCVY +L + FIYL+LY
Sbjct: 930 KENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLY 989
Query: 181 VDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKLYLNQKGYIER 240
VDDMLIA++ +I KLK LS EFEMKD+GAA+KILGMEI R+R +KL+L+Q+ YI++
Sbjct: 990 VDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQK 1049
Query: 241 VVSRFGMQNAKAVSTPLAPHFRLSDKQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPD 300
V++RFGM ++K + TP A + L+ +P + EK++M RVPYASAVGSLMYAMVCTRPD
Sbjct: 1050 VLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPD 1109
Query: 301 ISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFGGDT-CQVSGYVDSDYAGDL 359
++ AVSVVSRFM PG+ HW+AVK + RYL+GT D GL +GGDT C V+GY DSDYAGD+
Sbjct: 1110 LAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDV 1169
Query: 360 DRRRSTTGYVFRVHGALVSWRSMLQSTVALSTTEAEYMAMAEGVKEALWLWGLLDDLGIK 419
D RRS TGYVF + G++VSW++ LQ TV LSTTEAEYMA+ E KE +WL GL+ DLG+
Sbjct: 1170 DTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLH 1229
Query: 420 QECVDVWCDSQSAIHLAKNQIHHARIKHIDVRYHFVRDVIEEGDVSLMKVHTDENPADML 479
+ V+CDS SAI LAK+Q+HH R KHIDVRYHF+R E + + KV T +NPADM
Sbjct: 1230 HDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMF 1286
Query: 480 TKVVTCSKFQHCLELLQIGSC 500
TK V SKFQHCL+LL I SC
Sbjct: 1287 TKPVPQSKFQHCLDLLNIRSC 1307
>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/500 (63%), Positives = 389/500 (77%), Gaps = 3/500 (0%)
Query: 1 MQEEMESLHKNKTWEVVLLPEGKSVIGCKWVYKKKEDSSEIKGTRYKARLVAKGYAQKEG 60
M EE+ESLHKN TW + LP+GK + CKW+YKKK+ ++ R KARLV KG+ QKEG
Sbjct: 530 MNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQKEG 589
Query: 61 VDYNEIFSPVVKHTSIRVLLSIVAHRDLELEQLDVKTAFLHGVLEEEIYMAQPEGYKVEG 120
+D+NEIFSPVV+HTSIR+LL+ VA DLELEQLDVKTAFLHG LEEEIYM QPEG+ V
Sbjct: 590 IDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEGFVVPS 649
Query: 121 KENQVCRLRKSLYGLKQFPRQWYKRFDFFMLKHGFPRSDYDCCVYIKKLREGDFIYLLLY 180
KE+ VC+L+KSLYGLKQ PRQWYK+FD FM+ G+ RS YD C+Y ++ +G FIYLLLY
Sbjct: 650 KEHLVCQLKKSLYGLKQAPRQWYKKFDSFMIGQGYSRSKYDDCIYFQQFPDGTFIYLLLY 709
Query: 181 VDDMLIASRSMVEINKLKSQLSQEFEMKDMGAAKKILGMEIKRERSSKKLYLNQKGYIER 240
VDDMLIASR I+KLK+QL+ EFEMK++GAAKKILGMEI R+R KL+L+Q+ YIER
Sbjct: 710 VDDMLIASRDKSLISKLKAQLNNEFEMKELGAAKKILGMEIHRDRQVGKLFLSQQKYIER 769
Query: 241 VVSRFGMQNAKAVSTPLAPHFRLSDKQSPTTTVEKDHMDRVPYASAVGSLMYAMVCTRPD 300
++ RF M N K VSTPLA HF+LS P T E + M VPYASAVGSLMYAMVCTRPD
Sbjct: 770 LLDRFNMNNCKPVSTPLAAHFKLSSDLCPQTKEEMERMSHVPYASAVGSLMYAMVCTRPD 829
Query: 301 ISQAVSVVSRFMANPGKTHWEAVKWVLRYLKGTVDTGLCFG---GDTCQVSGYVDSDYAG 357
++ AVS+VSR+M NPGK HW AVKW+ RYLKGT + GL F T V+G+VDSDY G
Sbjct: 830 LAYAVSMVSRYMHNPGKDHWSAVKWIFRYLKGTSNIGLVFDRNKATTNNVAGFVDSDYGG 889
Query: 358 DLDRRRSTTGYVFRVHGALVSWRSMLQSTVALSTTEAEYMAMAEGVKEALWLWGLLDDLG 417
DLDRRRS +GY+F + + +SW++ LQS ALSTTEAEY++ EGVKEALW+ GL+ +LG
Sbjct: 890 DLDRRRSLSGYIFTLCNSAISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELG 949
Query: 418 IKQECVDVWCDSQSAIHLAKNQIHHARIKHIDVRYHFVRDVIEEGDVSLMKVHTDENPAD 477
+ Q+ + V+CDSQSAIHL KN +H + KHIDV++HF+RD++ G+V L KVHT ENPAD
Sbjct: 950 LTQDVLTVFCDSQSAIHLTKNSRYHDKTKHIDVKHHFIRDIVTIGEVLLQKVHTSENPAD 1009
Query: 478 MLTKVVTCSKFQHCLELLQI 497
MLTK + +KFQHCL L+ +
Sbjct: 1010 MLTKPLPNAKFQHCLGLVGL 1029