BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1530.1
(325 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP53808.1 Retrovirus-related Pol polyprotein from transposon TN... 317 e-102
P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from t... 333 e-101
KYP66486.1 Retrovirus-related Pol polyprotein from transposon TN... 333 e-101
>KYP53808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 464
Score = 317 bits (813), Expect = e-102, Method: Compositional matrix adjust.
Identities = 159/298 (53%), Positives = 211/298 (70%), Gaps = 7/298 (2%)
Query: 33 DIILLSGCGD-TCLS----MTESELETTWLVDSGASYHATSCKDFFRSHKTGDLGKVRMG 87
D + + CGD CL + E+ W+VDSGA+ H TS K+FF S+ +GD G ++MG
Sbjct: 167 DRVTTATCGDLVCLRDYDIVNLVSDESMWIVDSGATLHVTSRKEFFTSYTSGDFGVLKMG 226
Query: 88 NLGFSKIIGIGEVNIETSTGSTLILMNVRNIPDLRYNLVSKGVLDDEGYHSHFGDGKWKL 147
N G SK+IG+G+V ++T+ G L+L V+++PD+R+NL+S VLDD GY +HFG GKWKL
Sbjct: 227 NDGVSKVIGVGDVCLQTNMGMQLLLKGVKHVPDVRFNLISVQVLDDGGYDNHFGSGKWKL 286
Query: 148 TKGLMVKVRGKKCCTLYRTQVKLCKGELNAVEKDSSIDLWHRRLGHMSEKGLQILPKRQD 207
TKG ++ +G+K LY T+ + K +NA+ +SS LWHRRLGH+SEKG+ L K+
Sbjct: 287 TKGNLIVAKGEKNSKLYWTKALVAKDSVNAMYMESS--LWHRRLGHISEKGMNCLAKKDM 344
Query: 208 LPNMKCINLNTCSHCLIGKQHRVSFQRNASKRKFSVLELVYSDVCGPLKVKTLGGALYFV 267
L +K + L CSHC+ GKQ RVSF++ RK +LELV+SDVCGPLKVK+ GALYFV
Sbjct: 345 LLGLKNVELEKCSHCMAGKQARVSFKKYPPSRKSELLELVHSDVCGPLKVKSFNGALYFV 404
Query: 268 TCIDDPSWKIWAYAIKTKDQVLTAFKNFHNMVEQETGKSLKCIRTDNGGEYIGSFEEY 325
T IDD S K+W YA+KTKDQVL FK FH +VE+++GK LKCIRTDNGGEY G + Y
Sbjct: 405 TFIDDCSRKLWVYALKTKDQVLEKFKEFHALVERQSGKKLKCIRTDNGGEYCGPVDVY 462
>P10978.1 RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease CAA32025.1 unnamed protein product
[Nicotiana tabacum]
Length = 1328
Score = 333 bits (854), Expect = e-101, Method: Compositional matrix adjust.
Identities = 162/330 (49%), Positives = 228/330 (69%), Gaps = 11/330 (3%)
Query: 2 GHYKSAYRKPKK-----ENKKDDEKQANAAAVASGDDIILLSGCGDTCLSMTESELETTW 56
GH+K P+K +K+D+ AA V + D+++L + C+ ++ E E W
Sbjct: 239 GHFKRDCPNPRKGKGETSGQKNDDN--TAAMVQNNDNVVLFINEEEECMHLSGPESE--W 294
Query: 57 LVDSGASYHATSCKDFFRSHKTGDLGKVRMGNLGFSKIIGIGEVNIETSTGSTLILMNVR 116
+VD+ AS+HAT +D F + GD G V+MGN +SKI GIG++ I+T+ G TL+L +VR
Sbjct: 295 VVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVR 354
Query: 117 NIPDLRYNLVSKGVLDDEGYHSHFGDGKWKLTKGLMVKVRGKKCCTLYRTQVKLCKGELN 176
++PDLR NL+S LD +GY S+F + KW+LTKG +V +G TLYRT ++C+GELN
Sbjct: 355 HVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGELN 414
Query: 177 AVEKDSSIDLWHRRLGHMSEKGLQILPKRQDLPNMKCINLNTCSHCLIGKQHRVSFQRNA 236
A + + S+DLWH+R+GHMSEKGLQIL K+ + K + C +CL GKQHRVSFQ +
Sbjct: 415 AAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQ-TS 473
Query: 237 SKRKFSVLELVYSDVCGPLKVKTLGGALYFVTCIDDPSWKIWAYAIKTKDQVLTAFKNFH 296
S+RK ++L+LVYSDVCGP++++++GG YFVT IDD S K+W Y +KTKDQV F+ FH
Sbjct: 474 SERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFH 533
Query: 297 NMVEQETGKSLKCIRTDNGGEYIG-SFEEY 325
+VE+ETG+ LK +R+DNGGEY FEEY
Sbjct: 534 ALVERETGRKLKRLRSDNGGEYTSREFEEY 563
>KYP66486.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1321
Score = 333 bits (854), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/330 (52%), Positives = 230/330 (69%), Gaps = 12/330 (3%)
Query: 2 GHYKSAYRKPKKENKKDDEKQAN-----AAAVASGDDIILLSGCGDTCLSMTESELETTW 56
GH K R KKE + D+ QAN A AS D+I LL G+ C +E + W
Sbjct: 233 GHLKKNCRFLKKEIQ--DKNQANDRNTAATTSASDDEITLLCNQGECCHI---AEPDEEW 287
Query: 57 LVDSGASYHATSCKDFFRSHKTGDLGKVRMGNLGFSKIIGIGEVNIETSTGSTLILMNVR 116
++DS ASYH +++F +++ GD G V MGN S+I+GIG+++++T G TLIL +VR
Sbjct: 288 IIDSAASYHCVPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDIHLQTGVGCTLILKDVR 347
Query: 117 NIPDLRYNLVSKGVLDDEGYHSHFGDGKWKLTKGLMVKVRGKKCCTLYRTQVKLCKGELN 176
+IPD+R NL+S VLD EGY G+WKLTKG +V +GK CCTLY+T VK+CKG+LN
Sbjct: 348 HIPDIRLNLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLYKTYVKVCKGQLN 407
Query: 177 AVEKDSSIDLWHRRLGHMSEKGLQILPKRQDLPNMKCINLNTCSHCLIGKQHRVSFQRNA 236
AVE D+S +LWHRRL H+SEKGLQ+L K+ +P K LN C +C+ GK HRVSF++++
Sbjct: 408 AVENDASPNLWHRRLAHISEKGLQLLAKQSLIPQAKGDFLNPCDYCVFGKHHRVSFKKSS 467
Query: 237 SKRKFSVLELVYSDVCGPLKVKTLGGALYFVTCIDDPSWKIWAYAIKTKDQVLTAFKNFH 296
+++K + LELV+SDVCGP++V++LGG YFVT IDD S K W Y ++ K QV F+ FH
Sbjct: 468 NRKK-NKLELVHSDVCGPMEVESLGGNKYFVTFIDDASRKTWVYLLQAKSQVFQCFQQFH 526
Query: 297 NMVEQETGKSLKCIRTDNGGEYIG-SFEEY 325
MVE+ETGK LKCIRTDNGGEYI F++Y
Sbjct: 527 AMVERETGKQLKCIRTDNGGEYISKEFKDY 556