BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1540.1
(240 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP76811.1 Retrovirus-related Pol polyprotein from transposon TN... 220 2e-62
KYP76810.1 Retrovirus-related Pol polyprotein from transposon TN... 220 2e-62
BAA11674.1 unnamed protein product [Nicotiana tabacum] 218 1e-61
>KYP76811.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 220 bits (561), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 163/242 (67%), Gaps = 29/242 (11%)
Query: 28 EKFGYRLWDPVDKNIIRSRDVVFLEYQTIEEFEKVEKHENHSDDLIDIDPHISSKVMHDN 87
++FGYRLWDP++K ++RSRDVVF E QTIE+ + EK + H +++ DN
Sbjct: 665 DEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEKPRLRKSTELTPVQHENNETHQDN 724
Query: 88 AGEE----------QNHEDEAHEDVLMSD-------------------DVEQRMEVQQEP 118
EE + H++ A ED S + E+ + + E
Sbjct: 725 DPEEDEPVLEQSNQETHDEPAQEDPQSSSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEG 784
Query: 119 PVECYEEALDDVHRKEWLKAMQDEIESLCKNNTFKLVENPKNKKILKNKWVFKIRTEERN 178
+ Y+EA+ D+H++EW KAMQ+E++SL +N+T++LVE PK ++ LKNKWV++I+TE+ N
Sbjct: 785 EPQSYKEAIKDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNN 844
Query: 179 SQPRYKARLVVKGFGQKKGIDFDEIFSPMVNMSSIRLVLGLVASMNLEIEQLDLKTAFLH 238
++PRYKARLVVKGFGQ+KGIDF+EIFSP+V MSSIR++LG+ A+ +LEIEQLD+KTAFLH
Sbjct: 845 TKPRYKARLVVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLH 904
Query: 239 GD 240
GD
Sbjct: 905 GD 906
>KYP76810.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1305
Score = 220 bits (561), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 163/242 (67%), Gaps = 29/242 (11%)
Query: 28 EKFGYRLWDPVDKNIIRSRDVVFLEYQTIEEFEKVEKHENHSDDLIDIDPHISSKVMHDN 87
++FGYRLWDP++K ++RSRDVVF E QTIE+ + EK + H +++ DN
Sbjct: 665 DEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEKPRLRKSTELTPVQHENNETHQDN 724
Query: 88 AGEE----------QNHEDEAHEDVLMSD-------------------DVEQRMEVQQEP 118
EE + H++ A ED S + E+ + + E
Sbjct: 725 DPEEDEPVLEQSNQETHDEPAQEDPQSSSLPAPEPRRSSRERRPSTWYNTEEYVMLTDEG 784
Query: 119 PVECYEEALDDVHRKEWLKAMQDEIESLCKNNTFKLVENPKNKKILKNKWVFKIRTEERN 178
+ Y+EA+ D+H++EW KAMQ+E++SL +N+T++LVE PK ++ LKNKWV++I+TE+ N
Sbjct: 785 EPQSYKEAIKDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNN 844
Query: 179 SQPRYKARLVVKGFGQKKGIDFDEIFSPMVNMSSIRLVLGLVASMNLEIEQLDLKTAFLH 238
++PRYKARLVVKGFGQ+KGIDF+EIFSP+V MSSIR++LG+ A+ +LEIEQLD+KTAFLH
Sbjct: 845 TKPRYKARLVVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLH 904
Query: 239 GD 240
GD
Sbjct: 905 GD 906
>BAA11674.1 unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 218 bits (556), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/260 (48%), Positives = 166/260 (63%), Gaps = 45/260 (17%)
Query: 24 GYADEKFGYRLWDPVDKNIIRSRDVVFLEYQTIEEFEKVEKHENHS-------------- 69
GY + GY+ +DPV+K ++RSRDVVF+E QTIE+ +KVEK + S
Sbjct: 675 GYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKSTDDSAEFELPPTVVPRQV 734
Query: 70 -DDLIDIDPHISSKV----MHDNAGEEQNHEDEAHED------VLMSDDVEQRME--VQQ 116
DD+ D P + D G E N +D+A E+ +L + R VQQ
Sbjct: 735 GDDVQDNQPEAPGLPNEDELADTEGNEDNGDDDADEEDQPQPPILNNPPYHTRSGRVVQQ 794
Query: 117 ----------------EPPVECYEEALDDVHRKEWLKAMQDEIESLCKNNTFKLVENPKN 160
EP + +EEA+DD H+++W++AMQDEI+SL +N TF+LV+ PK
Sbjct: 795 STRYSPHEYVLLTDGGEP--DSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKLPKG 852
Query: 161 KKILKNKWVFKIRTEERNSQPRYKARLVVKGFGQKKGIDFDEIFSPMVNMSSIRLVLGLV 220
K+ LKNKWVFK++ +E NS PR+KARLVVKGF Q+KGIDFDEIFSP+V M+SIR VLGL
Sbjct: 853 KRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLGLA 912
Query: 221 ASMNLEIEQLDLKTAFLHGD 240
AS+NLE+EQ+D+KTAFLHGD
Sbjct: 913 ASLNLEVEQMDVKTAFLHGD 932