BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000130.1_g1760.1
(277 letters)
Database: ./nr
95,329,361 sequences; 35,143,497,570 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KYP66219.1 Retrovirus-related Pol polyprotein from transposon TN... 315 6e-97
AAG50698.1 copia-type polyprotein, putative [Arabidopsis thalian... 318 1e-96
AAG60117.1 copia-type polyprotein, putative [Arabidopsis thaliana] 318 1e-96
>KYP66219.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1033
Score = 315 bits (807), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 194/285 (68%), Gaps = 17/285 (5%)
Query: 1 MKNNILSLGQLLEKGYDIRLKDLHLTLRDRTGILIAKVKMAKNRLFPLNIQHGDAKCLNA 60
MK+NILSLGQLLEKGYDI+LK+ +L++RD T IAKV M +NR+F LNIQ +CL
Sbjct: 332 MKSNILSLGQLLEKGYDIQLKNNNLSIRDNTSRFIAKVPMTRNRMFVLNIQSDGPQCLKM 391
Query: 61 IVKDRSWSWHLRLGHLNFDAMKTLANKKMVWGLQYIDDQNQVCEGCIYGKHHKISFSNEG 120
KD+SW WHLR GHLNF ++ L+ K MV GL I NQVCEGC+ GK ++SF E
Sbjct: 392 CYKDQSWLWHLRFGHLNFKGLELLSKKAMVRGLPCITHPNQVCEGCLLGKQFRLSFPKES 451
Query: 121 RWRASNVLELMHTDVCGPLNAMTNG-----------------VYFLKNKSEVFEVFKEFN 163
RA LEL+HTDVCGP+ + G VYFLK KSEVFE FK+F
Sbjct: 452 DSRAQKPLELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFK 511
Query: 164 DMVEKQSGFMIKKLRSDRCGEYTSRSFDKFCSEHGIVHEPTPSYTPQLNGVAEKKNCTIL 223
VEK+SG +IK LRSDR GE+TS+ F K+C ++GI + T +PQ NGVAE+KN TIL
Sbjct: 512 AHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTIL 571
Query: 224 NMERSMLKENSLPRKFWGEAVACSIYLLNRCPTKSVYMKTSEEAW 268
M RSMLK LP++FW EAVAC++YL NR PT+SV KT +EAW
Sbjct: 572 EMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAW 616
>AAG50698.1 copia-type polyprotein, putative [Arabidopsis thaliana] AAG50765.1
copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 318 bits (815), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 198/285 (69%), Gaps = 17/285 (5%)
Query: 1 MKNNILSLGQLLEKGYDIRLKDLHLTLRDRTGILIAKVKMAKNRLFPLNIQHGDAKCLNA 60
MK NILSLGQLLEKGYDIRLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL
Sbjct: 400 MKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKM 459
Query: 61 IVKDRSWSWHLRLGHLNFDAMKTLANKKMVWGLQYIDDQNQVCEGCIYGKHHKISFSNEG 120
K+ SW WHLR GHLNF ++ L+ K+MV GL I+ NQVCEGC+ GK K+SF E
Sbjct: 460 CYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKES 519
Query: 121 RWRASNVLELMHTDVCGPLNAMTNG-----------------VYFLKNKSEVFEVFKEFN 163
RA LEL+HTDVCGP+ + G VYFLK KSEVFE+FK+F
Sbjct: 520 SSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFK 579
Query: 164 DMVEKQSGFMIKKLRSDRCGEYTSRSFDKFCSEHGIVHEPTPSYTPQLNGVAEKKNCTIL 223
VEK+SG +IK +RSDR GE+TS+ F K+C ++GI + T +PQ NGVAE+KN TIL
Sbjct: 580 AHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTIL 639
Query: 224 NMERSMLKENSLPRKFWGEAVACSIYLLNRCPTKSVYMKTSEEAW 268
M RSMLK LP++ W EAVAC++YLLNR PTKSV KT +EAW
Sbjct: 640 EMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAW 684
>AAG60117.1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 318 bits (816), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 198/285 (69%), Gaps = 17/285 (5%)
Query: 1 MKNNILSLGQLLEKGYDIRLKDLHLTLRDRTGILIAKVKMAKNRLFPLNIQHGDAKCLNA 60
MK NILSLGQLLEKGYDIRLKD +L++RD+ LI KV M+KNR+F LNI++ A+CL
Sbjct: 400 MKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKM 459
Query: 61 IVKDRSWSWHLRLGHLNFDAMKTLANKKMVWGLQYIDDQNQVCEGCIYGKHHKISFSNEG 120
K+ SW WHLR GHLNF ++ L+ K+MV GL I+ NQVCEGC+ GK K+SF E
Sbjct: 460 CYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKES 519
Query: 121 RWRASNVLELMHTDVCGPLNAMTNG-----------------VYFLKNKSEVFEVFKEFN 163
RA LEL+HTDVCGP+ + G VYFLK KSEVFE+FK+F
Sbjct: 520 SSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFK 579
Query: 164 DMVEKQSGFMIKKLRSDRCGEYTSRSFDKFCSEHGIVHEPTPSYTPQLNGVAEKKNCTIL 223
VEK+SG +IK +RSDR GE+TS+ F K+C ++GI + T +PQ NGVAE+KN TIL
Sbjct: 580 AHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTIL 639
Query: 224 NMERSMLKENSLPRKFWGEAVACSIYLLNRCPTKSVYMKTSEEAW 268
M RSMLK LP++ W EAVAC++YLLNR PTKSV KT +EAW
Sbjct: 640 EMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAW 684