Eca_sc000058.1_g1240.1
Sequence
Init: Term:
reverse complement
BLAST
nr XP_010271642.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 502 70 450 0.0 99.20 56.77 66.73
Subject 498 89 469
Annot PREDICTED: heterogeneous nuclear ribonucleoprotein R [Nelumbo nucifera]
araport AT4G00830.6 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 502 60 502 e-151 98.60 45.21 61.75
Subject 495 68 495
Annot | RNA-binding (RRM/RBD/RNP motifs) family protein | Chr4:352782-354965 FORWARD LENGTH=495 | 201606
InterProScan
Analysis Signature Location E-value InterPro
Accession Description Start Stop
superfamily SSF54928 RNA-binding domain, RBD 102 278 1.1e-33 NULL
superfamily SSF54928 RNA-binding domain, RBD 276 393 3.6e-21 NULL
HMMPfam PF00076 RRM_1 191 256 7e-09 IPR000504
HMMPfam PF00076 RRM_1 285 354 1.5e-17 IPR000504
HMMPfam PF14259 RRM_6 110 181 1.1e-19 NULL
Gene3D G3DSA:3.30.70.330 no description 111 268 1e-36 IPR012677
Gene3D G3DSA:3.30.70.330 no description 396 397 6.8e-22 IPR012677
HMMSmart SM00360 RNA recognition motif 109 183 5.6e-23 IPR000504
HMMSmart SM00361 RNA recognition motif 109 183 3.2e-07 IPR003954
HMMSmart SM00360 RNA recognition motif 190 267 9.6e-09 IPR000504
HMMSmart SM00360 RNA recognition motif 284 357 2.6e-18 IPR000504
HMMPanther PTHR24011:SF134 SUBFAMILY NOT NAMED 2 467 2.1e-153 NULL
HMMPanther PTHR24011 FAMILY NOT NAMED 2 467 2.1e-153 NULL
ProfileScan PS50102 RRM 108 187 18.581 IPR000504
ProfileScan PS50102 RRM 283 361 15.699 IPR000504
ProfileScan PS50102 RRM 189 271 11.742 IPR000504
Coil coil coiled-coil 36 74 NA NULL

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